Evidence map›Paper›PMID 32997663›Full record

ArticlePLoS biology2020

Posttranslational insertion of small membrane proteins by the bacterial signal recognition particle.

Ruth Steinberg, Andrea Origi, Ana Natriashvili, Pinku Sarmah, Mariya Licheva, Princess M Walker, Claudine Kraft, Stephen High, Joen Luirink, Wei Q Shi and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Little reason to call them small noncoding RNAs.Frontiers in microbiology · 2023
    Article
  10. Mapping functional regions of essential bacterial proteins with dominant-negative protein fragments.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Review
  12. Small Proteins; Big Questions.Journal of bacteriology · 2022
    Article
  13. Article
  14. Maturation ofFrontiers in microbiology · 2021
    Article
  15. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 4 countries.

Ruth SteinbergInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Freiburg, Germany.ORCID 0000-0003-4108-6085
Andrea OrigiInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Freiburg, Germany.ORCID 0000-0002-7679-1609
Ana NatriashviliInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Freiburg, Germany.
Pinku SarmahInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Freiburg, Germany.
Mariya LichevaInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Freiburg, Germany.ORCID 0000-0001-7722-7340
Princess M WalkerDepartment of Chemistry, Ball State University, Muncie, Indiana, United States of America.
Claudine KraftInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Freiburg, Germany.
Stephen HighSchool of Biological Sciences, University of Manchester, Manchester, United Kingdom.ORCID 0000-0002-4532-8152
Joen LuirinkMolecular Microbiology, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Wei Q ShiDepartment of Chemistry, Ball State University, Muncie, Indiana, United States of America.ORCID 0000-0001-5453-1753
Martin HelmstädterInternal Medicine IV, Department of Medicine, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Maximilian H UlbrichInternal Medicine IV, Department of Medicine, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID 0000-0001-8123-1668
Hans-Georg KochInstitute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Freiburg, Germany.ORCID 0000-0001-5913-0334
University of Freiburg · DEBall State University · USUniversity of Manchester · GBVrije Universiteit Amsterdam · NL

Funding

Medicinal Chemistry and Chemical Proteomics of Ipomoeassin Natural GlycoresinsR15GM116032 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI SHI, WEI · 2015 to 2020
$767k
European Research Council 769065NIGMS NIH HHS R15 GM116032Wellcome Trust 204957/Z/16/Z
6 · The paper itself

Abstract

Small membrane proteins represent a largely unexplored yet abundant class of proteins in pro- and eukaryotes. They essentially consist of a single transmembrane domain and are associated with stress response mechanisms in bacteria. How these proteins are inserted into the bacterial membrane is unknown. Our study revealed that in Escherichia coli, the 27-amino-acid-long model protein YohP is recognized by the signal recognition particle (SRP), as indicated by in vivo and in vitro site-directed cross-linking. Cross-links to SRP were also observed for a second small membrane protein, the 33-amino-acid-long YkgR. However, in contrast to the canonical cotranslational recognition by SRP, SRP was found to bind to YohP posttranslationally. In vitro protein transport assays in the presence of a SecY inhibitor and proteoliposome studies demonstrated that SRP and its receptor FtsY are essential for the posttranslational membrane insertion of YohP by either the SecYEG translocon or by the YidC insertase. Furthermore, our data showed that the yohP mRNA localized preferentially and translation-independently to the bacterial membrane in vivo. In summary, our data revealed that YohP engages an unique SRP-dependent posttranslational insertion pathway that is likely preceded by an mRNA targeting step. This further highlights the enormous plasticity of bacterial protein transport machineries.

Indexed as

Protein Processing, Post-TranslationalAmino Acid SequenceEscherichia coliEscherichia coli ProteinsMembrane ProteinsModels, BiologicalProtein BindingProtein BiosynthesisProtein TransportRNA, MessengerSEC Translocation ChannelsSignal Recognition ParticleEscherichia coli ProteinsMembrane ProteinsRNA, MessengerSEC Translocation ChannelsSignal Recognition Particle

Identifiers

PMID32997663
PMCPMC7549839
OpenAlexW3090107514

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.