Evidence map›Paper›PMID 32997658›Full record

ArticlePLoS computational biology2020

Cyclic transitions between higher order motifs underlie sustained asynchronous spiking in sparse recurrent networks.

Kyle Bojanek, Yuqing Zhu, Jason MacLean

Abstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Stimulus-invariant aspects of the retinal code drive discriminability of natural scenes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Stimulus-dependent functional network topology in mouse visual cortex.bioRxiv : the preprint server for biology · 2023
    Article
  8. Article
  9. Article
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kyle BojanekCommittee on Computational Neuroscience, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0001-5386-5209
Yuqing ZhuCommittee on Computational Neuroscience, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0003-2735-4143
Jason MacLeanCommittee on Computational Neuroscience, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0002-8021-8063

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A basic-yet nontrivial-function which neocortical circuitry must satisfy is the ability to maintain stable spiking activity over time. Stable neocortical activity is asynchronous, critical, and low rate, and these features of spiking dynamics contribute to efficient computation and optimal information propagation. However, it remains unclear how neocortex maintains this asynchronous spiking regime. Here we algorithmically construct spiking neural network models, each composed of 5000 neurons. Network construction synthesized topological statistics from neocortex with a set of objective functions identifying naturalistic low-rate, asynchronous, and critical activity. We find that simulations run on the same topology exhibit sustained asynchronous activity under certain sets of initial membrane voltages but truncated activity under others. Synchrony, rate, and criticality do not provide a full explanation of this dichotomy. Consequently, in order to achieve mechanistic understanding of sustained asynchronous activity, we summarized activity as functional graphs where edges between units are defined by pairwise spike dependencies. We then analyzed the intersection between functional edges and synaptic connectivity- i.e. recruitment networks. Higher-order patterns, such as triplet or triangle motifs, have been tied to cooperativity and integration. We find, over time in each sustained simulation, low-variance periodic transitions between isomorphic triangle motifs in the recruitment networks. We quantify the phenomenon as a Markov process and discover that if the network fails to engage this stereotyped regime of motif dominance "cycling", spiking activity truncates early. Cycling of motif dominance generalized across manipulations of synaptic weights and topologies, demonstrating the robustness of this regime for maintenance of network activity. Our results point to the crucial role of excitatory higher-order patterns in sustaining asynchronous activity in sparse recurrent networks. They also provide a possible explanation why such connectivity and activity patterns have been prominently reported in neocortex.

Indexed as

Models, NeurologicalNeural Networks, ComputerAction PotentialsAlgorithmsAnimalsComputer SimulationMarkov ChainsNeocortexNeurons

Identifiers

PMID32997658
PMCPMC7549833

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.