Evidence map›Paper›PMID 32994474›Full record

ArticleScientific reports2020

Precision multidimensional neural population code recovered from single intracellular recordings.

James K Johnson, Songyuan Geng, Maximilian W Hoffman, Hillel Adesnik, Ralf Wessel

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

James K JohnsonWashington University in St. Louis, St. Louis, USA. jkjohnson@wustl.edu.
Songyuan GengWashington University in St. Louis, St. Louis, USA.
Maximilian W HoffmanWashington University in St. Louis, St. Louis, USA.
Hillel AdesnikUniversity of California, Berkeley, Berkeley, USA.
Ralf WesselWashington University in St. Louis, St. Louis, USA.

Funding

Excitation and Inhibition in Neural Circuits of the Visual CortexR01EY023756 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Hillel Adesnik · 2013 to 2026
$6.1M
NEI NIH HHS R01 EY023756NIH HHS R01EY023756-01
6 · The paper itself

Abstract

Neurons in sensory cortices are more naturally and deeply integrated than any current neural population recording tools (e.g. electrode arrays, fluorescence imaging). Two concepts facilitate efforts to observe population neural code with single-cell recordings. First, even the highest quality single-cell recording studies find a fraction of the stimulus information in high-dimensional population recordings. Finding any of this missing information provides proof of principle. Second, neurons and neural populations are understood as coupled nonlinear differential equations. Therefore, fitted ordinary differential equations provide a basis for single-trial single-cell stimulus decoding. We obtained intracellular recordings of fluctuating transmembrane current and potential in mouse visual cortex during stimulation with drifting gratings. We use mean deflection from baseline when comparing to prior single-cell studies because action potentials are too sparse and the deflection response to drifting grating stimuli (e.g. tuning curves) are well studied. Equation-based decoders allowed more precise single-trial stimulus discrimination than tuning-curve-base decoders. Performance varied across recorded signal types in a manner consistent with population recording studies and both classification bases evinced distinct stimulus-evoked phases of population dynamics, providing further corroboration. Naturally and deeply integrated observations of population dynamics would be invaluable. We offer proof of principle and a versatile framework.

Indexed as

Action PotentialsAlgorithmsAnimalsMiceMotion PerceptionNonlinear DynamicsPhotic StimulationProof of Concept StudySingle-Cell AnalysisVisual Cortex

Identifiers

PMID32994474
PMCPMC7524839

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.