Evidence map›Paper›PMID 32993516›Full record

ArticleBMC genomics2020

Transcriptome characterization of BPG axis and expression profiles of ovarian steroidogenesis-related genes in the Japanese sardine.

Mitsuo Nyuji, Yuki Hongo, Michio Yoneda, Masahiro Nakamura

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Mitsuo NyujiFisheries Resources Institute, Japan Fisheries Research and Education Agency, Yokohama, 236-8648, Japan. nyuujim@affrc.go.jp.ORCID http://orcid.org/0000-0003-1436-3016
Yuki HongoFisheries Resources Institute, Japan Fisheries Research and Education Agency, Yokohama, 236-8648, Japan.
Michio YonedaHakatajima Field Station, Fisheries Technology Institute, Japan Fisheries Research and Education Agency, Kinoura, Imabari, Ehime, 794-2305, Japan.
Masahiro NakamuraHakatajima Field Station, Fisheries Technology Institute, Japan Fisheries Research and Education Agency, Kinoura, Imabari, Ehime, 794-2305, Japan.
Japan Fisheries Research and Education Agency · JP

Funding

Japan Society for the Promotion of Science 15K18738Japan Society for the Promotion of Science 19H05540
6 · The paper itself

Abstract

backgroundThe clupeoid fishes are ecologically and commercially important fish species worldwide that exhibit a high level of population fluctuation, accompanied by alteration of reproductive traits. However, knowledge about their reproductive physiology in order to understand mechanisms underlying such population dynamics is limited. The endocrine system along with the brain-pituitary-gonadal (BPG) axis is critical for regulating reproduction. The aims of this study were to provide transcript data and genes related to the BPG axis, and to characterize the expression profiles of ovarian steroidogenesis-related genes in the Japanese sardine (Sardinops melanostictus, Clupeidae).

resultsRNA sequencing was performed using the sardine brain, pituitary, and gonad in both sexes. A total of 290,119 contigs were obtained and 115,173 non-redundant ORFs were annotated. The genes differentially expressed between ovary and testis were strongly associated with GO terms related to gamete production. The tissue-specific profile of the abundance of transcripts was characterized for the major regulators in the BPG axis, such as gonadotropin-releasing hormone, gonadotropin, and steroidogenic enzyme. By comparing between ovary and testis, out of eight different 17β-hydroxysteroid dehydrogenase (Hsd17b) genes identified, higher hsd17b7 expression was found in testis, whereas higher expression of hsd17b8, hsd17b10, hsd17b12a, and hsd17b12b was found in ovary. The cDNAs encoding key endocrine factors in the ovarian steroidogenic pathway were cloned, sequenced, and quantitatively assayed. In the pituitary, follicle-stimulating hormone beta peaked during vitellogenesis, while luteinizing hormone beta peaked at the completion of vitellogenesis. In the ovary, follicle-stimulating hormone receptor and luteinizing hormone receptor were upregulated from mid- to late phase of vitellogenesis. Furthermore, three steroidogenic enzyme genes (cyp11a1, cyp17a1, and cyp19a1a) gradually increased their expression during ovarian development, accompanying a rise in serum estradiol-17β, while 3β-hydroxysteroid dehydrogenase and steroidogenic acute regulatory protein did not change significantly.

conclusionsThis is the first report of deep RNA sequencing analysis of Japanese sardine, in which many key genes involved in the BPG axis were identified. Expression profiles of ovarian steroidogenesis-related genes provide a molecular basis of the physiological processes underlying ovarian development in the sardine. Our study will be a valuable resource for clarifying the molecular biology of clupeoid fishes.

Indexed as

Transcriptome11-beta-Hydroxysteroid DehydrogenasesAnimalsBrainCytochrome P-450 Enzyme SystemFemaleFishesFish ProteinsFollicle Stimulating HormoneGonadal Steroid HormonesLuteinizing HormoneOvaryPituitary Gland11-beta-Hydroxysteroid DehydrogenasesCytochrome P-450 Enzyme SystemFish ProteinsFollicle Stimulating HormoneGonadal Steroid HormonesLuteinizing HormoneClupeoid fishFshLhOvaryReproductionRNA-seqSteroidogenic enzyme

Identifiers

PMID32993516
PMCPMC7526130
OpenAlexW3091211458

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.