Evidence map›Paper›PMID 32993487›Full record

ArticleBMC plant biology2020

Integrated metabolic profiling and transcriptome analysis of pigment accumulation in diverse petal tissues in the lily cultivar 'Vivian'.

Xiaojuan Yin, Xinyue Lin, Yuxuan Liu, Muhammad Irfan, Lijing Chen, Li Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

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  7. AnDHN, a Dehydrin Protein FromFrontiers in plant science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Xiaojuan YinCollege of Horticulture, Key Laboratory of Protected Horticulture (Ministry of Education), College of Biosciences and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China.
Xinyue LinCollege of Horticulture, Key Laboratory of Protected Horticulture (Ministry of Education), College of Biosciences and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China.
Yuxuan LiuCollege of Horticulture, Key Laboratory of Protected Horticulture (Ministry of Education), College of Biosciences and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China.
Muhammad IrfanDepartment of Biotechnology, University of Sargodha, Sargodha, Pakistan.
Lijing ChenCollege of Horticulture, Key Laboratory of Protected Horticulture (Ministry of Education), College of Biosciences and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China. chenlijing1997@126.com.
Li ZhangCollege of Horticulture, Key Laboratory of Protected Horticulture (Ministry of Education), College of Biosciences and Biotechnology, Shenyang Agricultural University, Shenyang, 110866, Liaoning, China. zhangli@syau.edu.cn.
Shenyang Agricultural University · CNUniversity of Sargodha · PK

Funding

National Natural Science Foundation of China 31572150
6 · The paper itself

Abstract

backgroundPetals are the colorful region of many ornamental plants. Quality traits of petal color directly affect the value of ornamental plants. Although the regulatory mechanism of flower color has been widely studied in many plants, that of lily flower color is still worth further exploration.

resultsIn this study, the pigmentation regulatory network in different regions of the petal of lily cultivar 'Vivian' was analyzed through tissue structure, metabolites biosynthesis, and gene expression. We found that cell morphology of the petal in un-pigmented region differed from that in pigmented region. The cell morphology tends to flatten in un-pigmented region where the color is lighter. Moreover, high level anthocyanin was found in the pigmented regions by metabonomic analysis, especially cyanidin derivatives. However, flavanones were accumulated, contrast with anthocyanin in the un-pigmented regions of lily petal. To understand the relationship of these different metabolites and lily flower color, RNA-Seq was used to analyze the differentially expressed genes-related metabolite biosynthesis. Among these genes, the expression levels of several genes-related cyanidin derivatives biosynthesis were significantly different between the pigmented and un-pigmented regions, such as LvMYB5, LvMYB7, LvF3'H, LvDFR, LvANS and Lv3GT.

conclusionsThis data will help us to further understand the regulation network of lily petal pigmentation and create different unique color species.

Indexed as

Gene Expression ProfilingGenetic VariationChinaFlowersGene Expression Regulation, PlantGenes, PlantGenotypeLiliumPigmentationAnthocyaninsCyanidinLilyMetabolome sequencingScanning electron microscopyTranscription factorsTranscriptome sequencingTransporters

Identifiers

PMID32993487
PMCPMC7526134
OpenAlexW3091738413

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.