Evidence map›Paper›PMID 32990744›Full record

ArticleGigaScience2020

An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population.

Thomas Nind, James Sutherland, Gordon McAllister, Douglas Hardy, Ally Hume, Ruairidh MacLeod, Jacqueline Caldwell, Susan Krueger, Leandro Tramma, Ross Teviotdale and 17 more

Abstract read
In one paragraph

Article in GigaScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A National Network of Safe Havens: Scottish Perspective.Journal of medical Internet research · 2022
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Thomas NindHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
James SutherlandHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Gordon McAllisterHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Douglas HardyHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Ally HumeEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Ruairidh MacLeodEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Jacqueline CaldwellElectronic Data Research and Innovation Service (eDRIS), Public Health Scotland (PHS), Nine, Edinburgh Bioquarter, Little France Road, Edinburgh EH16 4UX, UK.
Susan KruegerHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Leandro TrammaHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Ross TeviotdaleHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Mohammed AbdelatifHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Kenny GillenHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Joe WardHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.
Donald ScobbieEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Ian BaillieElectronic Data Research and Innovation Service (eDRIS), Public Health Scotland (PHS), Nine, Edinburgh Bioquarter, Little France Road, Edinburgh EH16 4UX, UK.
Andrew BrooksEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Bianca ProdanEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
William KerrEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Dominic Sloan-MurphyEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Juan F R HerreraEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Dan McManusEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Carole MorrisElectronic Data Research and Innovation Service (eDRIS), Public Health Scotland (PHS), Nine, Edinburgh Bioquarter, Little France Road, Edinburgh EH16 4UX, UK.
Carol SinclairData Driven Innovation, Public Health Scotland (PHS), Gyle Square, 1 South Gyle Crescent, Edinburgh EH12 9EB,  UK.
Rob BaxterEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Mark ParsonsEdinburgh Parallel Computing Centre (EPCC), Edinburgh University, Bayes Centre, 47 Potterrow, Edinburgh EH8 9BT, UK.
Andrew MorrisHealth Data Research (HDR) UK, Gibbs Building, 215 Euston Road, London NW1 2BE, UK.
Emily JeffersonHealth Informatics Centre (HIC), School of Medicine, University of Dundee, (Main level 5 corridor), Second Floor, Level 7, Mailbox 15, Ninewells Hospital & Medical School, Dundee DD1 9SY2, UK.

Funding

Department of Health 05/40/04Department of Health RP-PG-0407-10314Medical Research Council G0902393Medical Research Council MC_PC_13041Medical Research Council MR/K006584/1Medical Research Council MR/K007017/1Medical Research Council MR/M501633/1Medical Research Council MR/M501633/2Medical Research Council MR/S010351/1Wellcome Trust
6 · The paper itself

Abstract

aimTo enable a world-leading research dataset of routinely collected clinical images linked to other routinely collected data from the whole Scottish national population. This includes more than 30 million different radiological examinations from a population of 5.4 million and >2 PB of data collected since 2010.

methodsScotland has a central archive of radiological data used to directly provide clinical care to patients. We have developed an architecture and platform to securely extract a copy of those data, link it to other clinical or social datasets, remove personal data to protect privacy, and make the resulting data available to researchers in a controlled Safe Haven environment.

resultsAn extensive software platform has been developed to host, extract, and link data from cohorts to answer research questions. The platform has been tested on 5 different test cases and is currently being further enhanced to support 3 exemplar research projects.

conclusionsThe data available are from a range of radiological modalities and scanner types and were collected under different environmental conditions. These real-world, heterogenous data are valuable for training algorithms to support clinical decision making, especially for deep learning where large data volumes are required. The resource is now available for international research access. The platform and data can support new health research using artificial intelligence and machine learning technologies, as well as enabling discovery science.

Indexed as

Big DataRadiologyArtificial IntelligenceHumansScotlandSoftwareAIBig DataMLRadiology

Identifiers

PMID32990744
PMCPMC7523405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.