Evidence map›Paper›PMID 32990596›Full record

ArticleeLife2020

Genome-wide CRISPR screens of oral squamous cell carcinoma reveal fitness genes in the Hippo pathway.

Annie Wai Yeeng Chai, Pei San Yee, Stacey Price, Shi Mun Yee, Hui Mei Lee, Vivian Kh Tiong, Emanuel Gonçalves, Fiona M Behan, Jessica Bateson, James Gilbert and 4 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 53 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Annie Wai Yeeng ChaiHead and Neck Cancer Research Team, Cancer Research Malaysia, Head and Neck Cancer Research Team, Subang Jaya, Selangor, Malaysia.ORCID 0000-0002-8015-6050
Pei San Yee *Head and Neck Cancer Research Team, Cancer Research Malaysia, Head and Neck Cancer Research Team, Subang Jaya, Selangor, Malaysia.
Stacey Price *Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, United Kingdom.
Shi Mun YeeHead and Neck Cancer Research Team, Cancer Research Malaysia, Head and Neck Cancer Research Team, Subang Jaya, Selangor, Malaysia.
Hui Mei LeeHead and Neck Cancer Research Team, Cancer Research Malaysia, Head and Neck Cancer Research Team, Subang Jaya, Selangor, Malaysia.
Vivian Kh TiongHead and Neck Cancer Research Team, Cancer Research Malaysia, Head and Neck Cancer Research Team, Subang Jaya, Selangor, Malaysia.
Emanuel GonçalvesWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, United Kingdom.ORCID 0000-0002-9967-5205
Fiona M BehanWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, United Kingdom.
Jessica BatesonWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, United Kingdom.
James GilbertWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, United Kingdom.
Aik Choon TanDepartment of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, United States.
Ultan McDermottOncology R&D AstraZeneca, CRUK Cambridge Institute, Cambridge, United Kingdom.
Mathew J GarnettWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, United Kingdom.
Sok Ching CheongHead and Neck Cancer Research Team, Cancer Research Malaysia, Head and Neck Cancer Research Team, Subang Jaya, Selangor, Malaysia.ORCID 0000-0002-6765-9542
Wellcome Sanger Institute · GBCancer Research Malaysia · MYAstraZeneca (United Kingdom) · GBMoffitt Cancer Center · USUniversity of Malaya · MY

Funding

Medical Research Council MR/P013457/1Wellcome TrustWellcome Trust 206194
6 · The paper itself

Abstract

New therapeutic targets for oral squamous cell carcinoma (OSCC) are urgently needed. We conducted genome-wide CRISPR-Cas9 screens in 21 OSCC cell lines, primarily derived from Asians, to identify genetic vulnerabilities that can be explored as therapeutic targets. We identify known and novel fitness genes and demonstrate that many previously identified OSCC-related cancer genes are non-essential and could have limited therapeutic value, while other fitness genes warrant further investigation for their potential as therapeutic targets. We validate a distinctive dependency on YAP1 and WWTR1 of the Hippo pathway, where the lost-of-fitness effect of one paralog can be compensated only in a subset of lines. We also discover that OSCCs with WWTR1 dependency signature are significantly associated with biomarkers of favorable response toward immunotherapy. In summary, we have delineated the genetic vulnerabilities of OSCC, enabling the prioritization of therapeutic targets for further exploration, including the targeting of YAP1 and WWTR1.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsGene Expression Regulation, NeoplasticCell Line, TumorGene Expression ProfilingHippo Signaling PathwayHumansMouth NeoplasmsProtein Serine-Threonine KinasesSignal TransductionSquamous Cell Carcinoma of Head and NeckProtein Serine-Threonine Kinasescancer biologyCRISPR screenfitness genesgeneticsgenomicsHippo pathwayhumanoral squamous cell carcinomatherapeutic targets

Identifiers

PMID32990596
PMCPMC7591259
OpenAlexW3090243064

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.