Evidence map›Paper›PMID 32990592›Full record

ArticleeLife2020

A physicochemical perspective of aging from single-cell analysis of pH, macromolecular and organellar crowding in yeast.

Sara N Mouton, David J Thaller, Matthew M Crane, Irina L Rempel, Owen T Terpstra, Anton Steen, Matt Kaeberlein, C Patrick Lusk, Arnold J Boersma, Liesbeth M Veenhoff

Abstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Liposome-EncapsulatedACS synthetic biology · 2025
    Article
  9. Macromolecular Crowding in Cell Stress and Death.Sub-cellular biochemistry · 2025
    Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. High Macromolecular Crowding in Liposomes from Microfluidics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sara N MoutonEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.ORCID 0000-0001-9429-3788
David J ThallerDepartment of Cell Biology, Yale School of Medicine, New Haven, United States.ORCID 0000-0003-3577-5562
Matthew M CraneDepartment of Pathology, School of Medicine, University of Washington, Seattle, United States.ORCID 0000-0002-6234-0954
Irina L RempelEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.ORCID 0000-0003-4655-5311
Owen T TerpstraEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.ORCID 0000-0002-8767-4061
Anton SteenEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.ORCID 0000-0002-1064-6038
Matt KaeberleinDepartment of Pathology, School of Medicine, University of Washington, Seattle, United States.ORCID 0000-0002-1311-3421
C Patrick LuskDepartment of Cell Biology, Yale School of Medicine, New Haven, United States.ORCID 0000-0003-4703-0533
Arnold J BoersmaDWI-Leibniz Institute for Interactive Materials, Aachen, Germany.ORCID 0000-0002-3714-5938
Liesbeth M VeenhoffEuropean Research Institute for the Biology of Ageing, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.ORCID 0000-0002-0158-4728

Funding

SPECIFICITY OF OXYGEN DNA DAMAGE AND MUTAGENESISP01AG001751 · NIA · UNIVERSITY OF WASHINGTON · PI PRUSKY, GLEN THOMAS · 1985 to 2021
$29.6M
University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI Maitreya J Dunham · 1995 to 2026
$27.1M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
The mechanism of ESCRT-mediated surveillance of the nuclear envelope barrierR01GM105672 · NIGMS · YALE UNIVERSITY · PI LUSK, CHARLES PATRICK · 2013 to 2025
$4.6M
Emergent properties of signaling network degradation that mediate homeostatic failure during agingR01AG056359 · NIA · UNIVERSITY OF WASHINGTON · PI KAEBERLEIN, MATT, VILLEN, JUDIT · 2017 to 2021
$2.9M
NIA NIH HHS P01 AG001751NIA NIH HHS P30 AG013280NIA NIH HHS T32 AG000057NIGMS NIH HHS R01 GM105672NIH HHS P30 AG013280NIH HHS R01 AG056359NIH HHS RO1 GM105672
6 · The paper itself

Abstract

Cellular aging is a multifactorial process that is characterized by a decline in homeostatic capacity, best described at the molecular level. Physicochemical properties such as pH and macromolecular crowding are essential to all molecular processes in cells and require maintenance. Whether a drift in physicochemical properties contributes to the overall decline of homeostasis in aging is not known. Here, we show that the cytosol of yeast cells acidifies modestly in early aging and sharply after senescence. Using a macromolecular crowding sensor optimized for long-term FRET measurements, we show that crowding is rather stable and that the stability of crowding is a stronger predictor for lifespan than the absolute crowding levels. Additionally, in aged cells, we observe drastic changes in organellar volume, leading to crowding on the micrometer scale, which we term organellar crowding. Our measurements provide an initial framework of physicochemical parameters of replicatively aged yeast cells.

Indexed as

Cellular SenescenceHydrogen-Ion ConcentrationOrganellesPopulation DensitySaccharomyces cerevisiaeSingle-Cell Analysisagingbiochemistrychemical biologycrowdingFRET sensormolecular biophysicspHS. cerevisiaestructural biology

Identifiers

PMID32990592
PMCPMC7556870

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.