Evidence map›Paper›PMID 32989607›Full record

ArticleFamilial cancer2021

FRAMe: Familial Risk Assessment of Melanoma-a risk prediction tool to guide CDKN2A germline mutation testing in Australian familial melanoma.

Elizabeth A Holland, Serigne Lo, Blake Kelly, Helen Schmid, Anne E Cust, Jane M Palmer, Martin Drummond, Nicholas K Hayward, Antonia L Pritchard, Graham J Mann

Abstract read
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In one paragraph

Article in Familial cancer, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Elizabeth A HollandCentre for Cancer Research, Westmead Institute for Medical Research, University of Sydney, Westmead, NSW, 2145, Australia. elizabeth.holland@sydney.edu.au.ORCID 0000-0002-4614-8399
Serigne LoMelanoma Institute Australia, The University of Sydney, North Sydney, NSW, 2065, Australia.ORCID 0000-0001-5092-5544
Blake KellyCentre for Cancer Research, Westmead Institute for Medical Research, University of Sydney, Westmead, NSW, 2145, Australia.ORCID 0000-0003-0105-4281
Helen SchmidCentre for Cancer Research, Westmead Institute for Medical Research, University of Sydney, Westmead, NSW, 2145, Australia.ORCID 0000-0003-0517-2939
Anne E CustMelanoma Institute Australia, The University of Sydney, North Sydney, NSW, 2065, Australia.ORCID 0000-0002-5331-6370
Jane M PalmerOncogenomics Group, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4005, Australia.ORCID 0000-0002-2702-522X
Martin DrummondMelanoma Institute Australia, The University of Sydney, North Sydney, NSW, 2065, Australia.
Nicholas K HaywardOncogenomics Group, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4005, Australia.ORCID 0000-0003-4760-1033
Antonia L PritchardOncogenomics Group, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4005, Australia.ORCID 0000-0001-5336-0454
Graham J MannCentre for Cancer Research, Westmead Institute for Medical Research, University of Sydney, Westmead, NSW, 2145, Australia.ORCID 0000-0003-1301-405X
The University of Sydney · AUQIMR Berghofer Medical Research Institute · AUAustralian National University · AU

Funding

Genetic Epidermiology of MelanomaR01CA083115 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BISHOP, DAVID TIMOTHY, ELDER, DAVID ERIC · 2001 to 2017
$13.0M
NCI NIH HHS R01 CA083115
6 · The paper itself

Abstract

Germline mutations in CDKN2A greatly increase risk of developing cutaneous melanoma. We have constructed a risk prediction model, Familial Risk Assessment of Melanoma (FRAMe), for estimating the likelihood of carrying a heritable CDKN2A mutation among Australian families, where the prevalence of these mutations is low. Using logistic regression, we analysed characteristics of 299 Australian families recruited through the Sydney site of GenoMEL (international melanoma genetics consortium) with at least three cases of cutaneous melanoma (in situ and invasive) among first-degree blood relatives, for predictors of the presence of a pathogenic CDKN2A mutation. The final multivariable prediction model was externally validated in an independent cohort of 61 melanoma kindreds recruited through GenoMEL Queensland. Family variables independently associated with the presence of a CDKN2A mutation in a multivariable model were number of individuals diagnosed with melanoma under 40 years of age, number of individuals diagnosed with more than one primary melanoma, and number of individuals blood related to a melanoma case in the first degree diagnosed with any cancer excluding melanoma and non-melanoma skin cancer. The number of individuals diagnosed with pancreatic cancer was not independently associated with mutation status. The risk prediction model had an area under the receiver operating characteristic curve (AUC) of 0.851 (95% CI 0.793, 0.909) in the training dataset, and 0.745 (95%CI 0.612, 0.877) in the validation dataset. This model is the first to be developed and validated using only Australian data, which is important given the higher rate of melanoma in the population. This model will help to effectively identify families suitable for genetic counselling and testing in areas of high ambient ultraviolet radiation. A user-friendly electronic nomogram is available at www.melanomarisk.org.au .

Indexed as

Family HealthGenes, p16Germ-Line MutationAdultAge FactorsAustraliaGenetic Carrier ScreeningGenetic CounselingHumansLogistic ModelsMelanomaNeoplasms, Multiple PrimaryPancreatic NeoplasmsPredictive Value of TestsQueenslandRisk AssessmentCDKN2AFamilial melanomaGenetic testingGenoMELGermline mutationNomogram

Identifiers

PMID32989607
OpenAlexW3090977444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.