Evidence map›Paper›PMID 32989304›Full record

ArticleNature structural & molecular biology2020

The condensin holocomplex cycles dynamically between open and collapsed states.

Je-Kyung Ryu, Allard J Katan, Eli O van der Sluis, Thomas Wisse, Ralph de Groot, Christian H Haering, Cees Dekker

Erratum issuedAbstract read
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In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Je-Kyung RyuDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft, the Netherlands.
Allard J KatanDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft, the Netherlands.
Eli O van der SluisDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft, the Netherlands.
Thomas WisseDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft, the Netherlands.
Ralph de GrootDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft, the Netherlands.
Christian H HaeringCell Biology and Biophysics Unit, Structural and Computational Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Cees DekkerDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft, the Netherlands. c.dekker@tudelft.nl.ORCID http://orcid.org/0000-0001-6273-071X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural maintenance of chromosome (SMC) protein complexes are the key organizers of the spatiotemporal structure of chromosomes. The condensin SMC complex has recently been shown to be a molecular motor that extrudes large loops of DNA, but the mechanism of this unique motor remains elusive. Using atomic force microscopy, we show that budding yeast condensin exhibits mainly open 'O' shapes and collapsed 'B' shapes, and it cycles dynamically between these two states over time, with ATP binding inducing the O to B transition. Condensin binds DNA via its globular domain and also via the hinge domain. We observe a single condensin complex at the stem of extruded DNA loops, where the neck size of the DNA loop correlates with the width of the condensin complex. The results are indicative of a type of scrunching model in which condensin extrudes DNA by a cyclic switching of its conformation between O and B shapes.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateCell Cycle ProteinsChromosomal Proteins, Non-HistoneChromosomes, FungalDNA-Binding ProteinsDNA, FungalFungal ProteinsGene ExpressionMicroscopy, Atomic ForceMultiprotein ComplexesNuclear ProteinsNucleic Acid ConformationProtein BindingProtein ConformationSaccharomyces cerevisiaeAdenosine TriphosphatasesAdenosine TriphosphateCell Cycle ProteinsChromosomal Proteins, Non-Histonecondensin complexesDNA-Binding ProteinsDNA, FungalFungal ProteinsMultiprotein ComplexesNuclear ProteinsSaccharomyces cerevisiae ProteinsSMC2 protein, S cerevisiaeSMC4 protein, S cerevisiae

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.