Evidence map›Paper›PMID 32989164›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers.

Jun Xu, Wei Wang, Liang Xu, Jia-Yu Chen, Jenny Chong, Juntaek Oh, Andres E Leschziner, Xiang-Dong Fu, Dong Wang

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 34 citations in OpenAlex.

  1. DNA Repair Mechanisms.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
  2. Article
  3. Review
  4. Topology Resetting During Transcription-Coupled Nucleotide Excision Repair.International journal of molecular sciences · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. The ARK2N-CK2 complex initiates transcription-coupled repair through enhancing the interaction of CSB with lesion-stalled RNAPII.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Article
  16. Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Review
  18. New roles for elongation factors in RNA polymerase II ubiquitylation and degradation.Biochimica et biophysica acta. Gene regulatory mechanisms · 2023
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jun XuDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093.
Wei WangDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093.
Liang XuDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093.
Jia-Yu ChenDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0001-9449-9321
Jenny ChongDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093.
Juntaek OhDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093.
Andres E LeschzinerDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-7732-7023
Xiang-Dong FuDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Dong WangDivision of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093; dongwang@ucsd.edu.ORCID 0000-0002-2829-1546
University of California San Diego · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Molecular Mechanisms for DNA Damage Processing by Transcription MachineryR01GM102362 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, DONG · 2013 to 2025
$5.6M
Synergestic roles of SRSF2 and RUNX1 in blood cell development and pathologyR01DK098808 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHANG, DONG-ER · 2013 to 2022
$4.8M
A comparative structural study of ATP-dependent chromatin remodeling complexesR01GM092895 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LESCHZINER, ANDRES · 2011 to 2021
$3.0M
R-loop in Transcription and DNA ReplicationK99DK120952 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHEN, JIAYU · 2019 to 2020
$182k
Synergestic roles of SRF2 and RUNX1 in blood cell development and pathologyR56DK098808 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FU, XIANG-DONG, ZHANG, DONG-ER · 2018 to 2018
$100k
NCI NIH HHS P30 CA023100NIDDK NIH HHS K99 DK120952NIDDK NIH HHS R01 DK098808NIDDK NIH HHS R56 DK098808NIGMS NIH HHS R01 GM092895NIGMS NIH HHS R01 GM102362
6 · The paper itself

Abstract

While loss-of-function mutations in Cockayne syndrome group B protein (CSB) cause neurological diseases, this unique member of the SWI2/SNF2 family of chromatin remodelers has been broadly implicated in transcription elongation and transcription-coupled DNA damage repair, yet its mechanism remains largely elusive. Here, we use a reconstituted in vitro transcription system with purified polymerase II (Pol II) and Rad26, a yeast ortholog of CSB, to study the role of CSB in transcription elongation through nucleosome barriers. We show that CSB forms a stable complex with Pol II and acts as an ATP-dependent processivity factor that helps Pol II across a nucleosome barrier. This noncanonical mechanism is distinct from the canonical modes of chromatin remodelers that directly engage and remodel nucleosomes or transcription elongation factors that facilitate Pol II nucleosome bypass without hydrolyzing ATP. We propose a model where CSB facilitates gene expression by helping Pol II bypass chromatin obstacles while maintaining their structures.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateDNA, FungalDNA HelicasesDNA Repair EnzymesEscherichia coliGene Expression Regulation, EnzymologicGene Expression Regulation, FungalModels, MolecularMutationNucleosomesPoly-ADP-Ribose Binding ProteinsProtein ConformationRNA Polymerase IISaccharomyces cerevisiae ProteinsSchizosaccharomycesAdenosine TriphosphatasesAdenosine TriphosphateDNA, FungalDNA HelicasesDNA Repair EnzymesERCC6 protein, humanNucleosomesPoly-ADP-Ribose Binding ProteinsRAD26 protein, S cerevisiaeRNA Polymerase IISaccharomyces cerevisiae Proteinschromatin remodelingCockayne syndromenucleosome bypassRNA polymerase IItranscription elongation

Identifiers

PMID32989164
PMCPMC7568279
OpenAlexW3090484393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.