Evidence map›Paper›PMID 32989044›Full record

ArticleRNA (New York, N.Y.)2020

Physiologic RNA targets and refined sequence specificity of coronavirus EndoU.

Rachel Ancar, Yize Li, Eveline Kindler, Daphne A Cooper, Monica Ransom, Volker Thiel, Susan R Weiss, Jay R Hesselberth, David J Barton

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
0.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
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  11. SARS-CoV-2 nsp15 enhances viral virulence by subverting host antiviral defenses.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Human coronaviruses: activation and antagonism of innate immune responses.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. SARS-CoV-2 nsp15 endoribonuclease antagonizes dsRNA-induced antiviral signaling.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. SARS-CoV-2 biology and host interactions.Nature reviews. Microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Rachel AncarDepartment of Biochemistry and Molecular Genetics, Program in Molecular Biology, School of Medicine, University of Colorado, Aurora 80045, Colorado, USA.
Yize LiDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Eveline KindlerInstitute of Virology and Immunology IVI, 3001 Bern and 3147 Mittelhausern, Switzerland.
Daphne A CooperDepartment of Immunology and Microbiology, School of Medicine, University of Colorado, Aurora, Colorado 80045, USA.
Monica RansomDepartment of Biochemistry and Molecular Genetics, Program in Molecular Biology, School of Medicine, University of Colorado, Aurora 80045, Colorado, USA.
Volker ThielInstitute of Virology and Immunology IVI, 3001 Bern and 3147 Mittelhausern, Switzerland.
Susan R WeissDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Jay R HesselberthDepartment of Biochemistry and Molecular Genetics, Program in Molecular Biology, School of Medicine, University of Colorado, Aurora 80045, Colorado, USA.ORCID 0000-0002-6299-179X
David J BartonDepartment of Immunology and Microbiology, Program in Molecular Biology, School of Medicine, University of Colorado, Aurora, Colorado 80045, USA.
University of Colorado Anschutz Medical Campus · USUniversity of Bern · CHUniversity of Pennsylvania · US

Funding

Medical Scientist Training ProgramT32GM008497 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI WILSON, CARA C. · 1993 to 2022
$15.2M
Control of Viral Pathogenesis by Regulation of 2-5A LevelsR01AI104887 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SILVERMAN, ROBERT H., WEISS, SUSAN R · 2013 to 2023
$7.6M
Enterovirus RNA Translation and ReplicationR01AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 1998 to 2024
$7.2M
REGULATION OF 2-5A-DEPENDENT RNASE LEVELS OF INTERFERONR01CA044059 · NCI · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI SILVERMAN, ROBERT H. · 1986 to 2015
$6.1M
MERS coronavirus: antagonism of double-stranded RNA induced host response by accessory proteinsR01AI140442 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Susan R Weiss · 2018 to 2026
$5.1M
Nanopore analysis of transfer RNA forms and functionsR35GM119550 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Jay R Hesselberth · 2016 to 2026
$4.5M
Predoctoral Training Program in Molecular and Cellular Biology (Supplement: Mentoring in the Research Environment)T32GM136444 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MICHAEL A MCMURRAY, Rytis Prekeris · 2020 to 2026
$3.7M
Enterovirus RNA Translation and ReplicationR56AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2009 to 2009
$341k
Enterovirus RNA Translation and ReplicationR21AI042189 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BARTON, DAVID J · 2003 to 2003
$268k
Endogenous RNA cleavage products that activate the RIG-I dependent interferon responseF30AI140615 · NIAID · UNIVERSITY OF COLORADO DENVER · PI ANCAR, RACHEL · 2019 to 2022
$170k
NCI NIH HHS R01 CA044059NIAID NIH HHS F30 AI140615NIAID NIH HHS R01 AI042189NIAID NIH HHS R01 AI104887NIAID NIH HHS R01 AI140442NIAID NIH HHS R21 AI042189NIAID NIH HHS R56 AI042189NIGMS NIH HHS R35 GM119550NIGMS NIH HHS T32 GM008497NIGMS NIH HHS T32 GM136444
6 · The paper itself

Abstract

Coronavirus EndoU inhibits dsRNA-activated antiviral responses; however, the physiologic RNA substrates of EndoU are unknown. In this study, we used mouse hepatitis virus (MHV)-infected bone marrow-derived macrophage (BMM) and cyclic phosphate cDNA sequencing to identify the RNA targets of EndoU. EndoU targeted viral RNA, cleaving the 3' side of pyrimidines with a strong preference for U

Indexed as

AnimalsCells, CulturedMacrophagesMiceMice, Inbred C57BLMurine hepatitis virusMutationNucleotide MotifsProtein BindingRNAUridylate-Specific EndoribonucleasesViral Nonstructural ProteinsRNAUridylate-Specific EndoribonucleasesViral Nonstructural ProteinscoronavirusdsRNAendoribonucleaseinnate immunitymouse hepatitis virus

Identifiers

PMID32989044
PMCPMC7668261
OpenAlexW3090158998

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.