Evidence map›Paper›PMID 32987276›Full record

ArticleCellular immunology2020

Multiple genetic programs contribute to CD4 T cell memory differentiation and longevity by maintaining T cell quiescence.

Nianbin Song, Srona Sengupta, Stanislav Khoruzhenko, Robin A Welsh, AeRyon Kim, Mithra R Kumar, Søren Ulrik Sønder, John-William Sidhom, Hao Zhang, Chunfa Jie and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Cellular immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. OMIP-087: Thirty-two parameter mass cytometry panel to assess human CD4 and CD8 T cell activation, memory subsets, and helper subsets.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Nianbin SongDepartment of Pathology, Johns Hopkins University, United States.
Srona SenguptaThe Graduate Program in Immunology, USA; Medical Scientist Training Program, USA.
Stanislav KhoruzhenkoMaxCyte, Inc., Gaithersburg, MD 20878, USA; Department of Pathology, Johns Hopkins University, United States.
Robin A WelshThe Graduate Program in Immunology, USA.
AeRyon KimThe Graduate Program in Immunology, USA; Amgen, South San Francisco, CA, USA; Department of Pathology, Johns Hopkins University, United States.
Mithra R KumarDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Søren Ulrik SønderAmerimmune LLC, Fairfax, VA 22030, USA; Department of Pathology, Johns Hopkins University, United States.
John-William SidhomMedical Scientist Training Program, USA; Department of Biomedical Engineering, and Bloomberg Kimmel Institute for Cancer Immunotherapy, Sidney Kimmel Comprehensive Cancer Center, USA.
Hao ZhangDepartment of Molecular Microbiology and Immunology, Johns Hopkins University School of Public Health, Baltimore, MD 21205, USA.
Chunfa JieDes Moines University, Des Moines, IA 50312, USA.
Robert F SilicianoHoward Hughes Medical Institute, Baltimore, MD, USA; Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Scheherazade Sadegh-NasseriThe Graduate Program in Immunology, USA; Department of Pathology, Johns Hopkins University, United States. Electronic address: ssadegh@jhmi.edu.
Johns Hopkins University · USAmgen (United States) · USDes Moines University · USHoward Hughes Medical Institute · USOffice of the Chief Scientist · ILSidney Kimmel Cancer Center · US

Funding

Role of DM in Generation of Immunodominant Epitope(s)R01AI063764 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SADEGH-NASSERI, SCHEHERAZADE · 2006 to 2015
$3.6M
Unconventional Sources of Peptides for Antigen PresentationR01AI121174 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SADEGH-NASSERI, SCHEHERAZADE · 2017 to 2022
$2.7M
Understanding the Impacts of HLA-DO in vivoR01AI120634 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SADEGH-NASSERI, SCHEHERAZADE · 2016 to 2019
$1.6M
Molecular Mechanisms of HLA-DO in Antigen ProcessingR21AI101987 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SADEGH-NASSERI, SCHEHERAZADE · 2012 to 2013
$433k
Analyzing Non-Classical Antigen Presentation in HIV-infected CD4+ T cellsF30AI136704 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SENGUPTA, SRONA · 2018 to 2020
$150k
Howard Hughes Medical InstituteNIAID NIH HHS F30 AI136704NIAID NIH HHS R01 AI063764NIAID NIH HHS R01 AI120634NIAID NIH HHS R01 AI121174NIAID NIH HHS R21 AI101987
6 · The paper itself

Abstract

While memory T-cells represent a hallmark of adaptive immunity, little is known about the genetic mechanisms regulating the longevity of memory CD4 T cells. Here, we studied the dynamics of gene expression in antigen specific CD4 T cells during infection, memory differentiation, and long-term survival up to nearly a year in mice. We observed that differentiation into long lived memory cells is associated with increased expression of genes inhibiting cell proliferation and apoptosis as well as genes promoting DNA repair response, lipid metabolism, and insulin resistance. We identified several transmembrane proteins in long-lived murine memory CD4 T cells, which co-localized exclusively within the responding antigen-specific memory CD4 T cells in human. The unique gene signatures of long-lived memory CD4 T cells, along with the new markers that we have defined, will enable a deeper understanding of memory CD4 T cell biology and allow for designing novel vaccines and therapeutics.

Indexed as

AdultAgingAnimalsCD4-Positive T-LymphocytesCell DifferentiationCell ProliferationCytokinesHumansImmunologic MemoryInterferon-gammaLymphocyte ActivationMaleMiceMice, Inbred BALB CMice, TransgenicCytokinesInterferon-gammaCD4 T cellCell longevityGeneGenetic programsMemory cell markersMemory T cell

Identifiers

PMID32987276
PMCPMC7737224
OpenAlexW3083156065

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.