Evidence map›Paper›PMID 32986754›Full record

ArticlePloS one2020

Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage.

Shawn M Higdon, Tania Pozzo, Nguyet Kong, Bihua C Huang, Mai Lee Yang, Richard Jeannotte, C Titus Brown, Alan B Bennett, Bart C Weimer

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Genomic Insights intoInternational journal of molecular sciences · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Genome-Based Characterization of Plant-AssociatedFrontiers in microbiology · 2021
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shawn M HigdonDepartment of Plant Sciences, University of California, Davis, California, United States of America.ORCID 0000-0002-0033-7688
Tania PozzoDepartment of Plant Sciences, University of California, Davis, California, United States of America.ORCID 0000-0002-3645-2303
Nguyet KongDepartment of Population Health and Reproduction, University of California, Davis, California, United States of America.ORCID 0000-0001-8696-0405
Bihua C HuangDepartment of Population Health and Reproduction, University of California, Davis, California, United States of America.
Mai Lee YangDepartment of Population Health and Reproduction, University of California, Davis, California, United States of America.
Richard JeannotteDepartment of Population Health and Reproduction, University of California, Davis, California, United States of America.
C Titus BrownDepartment of Population Health and Reproduction, University of California, Davis, California, United States of America.ORCID 0000-0001-6001-2677
Alan B BennettDepartment of Plant Sciences, University of California, Davis, California, United States of America.ORCID 0000-0002-3684-4307
Bart C WeimerDepartment of Population Health and Reproduction, University of California, Davis, California, United States of America.ORCID 0000-0002-7471-1978

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A geographically isolated maize landrace cultivated on nitrogen-depleted fields without synthetic fertilizer in the Sierra Mixe region of Oaxaca, Mexico utilizes nitrogen derived from the atmosphere and develops an extensive network of mucilage-secreting aerial roots that harbors a diazotrophic (N2-fixing) microbiota. Targeting these diazotrophs, we selected nearly 600 microbes of a collection obtained from mucilage and confirmed their ability to incorporate heavy nitrogen (15N2) metabolites in vitro. Sequencing their genomes and conducting comparative bioinformatic analyses showed that these genomes had substantial phylogenetic diversity. We examined each diazotroph genome for the presence of nif genes essential to nitrogen fixation (nifHDKENB) and carbohydrate utilization genes relevant to the mucilage polysaccharide digestion. These analyses identified diazotrophs that possessed the canonical nif gene operons, as well as many other operon configurations with concomitant fixation and release of >700 different 15N labeled metabolites. We further demonstrated that many diazotrophs possessed alternative nif gene operons and confirmed their genomic potential to derive chemical energy from mucilage polysaccharide to fuel nitrogen fixation. These results confirm that some diazotrophic bacteria associated with Sierra Mixe maize were capable of incorporating atmospheric nitrogen into their small molecule extracellular metabolites through multiple nif gene configurations while others were able to fix nitrogen without the canonical (nifHDKENB) genes.

Indexed as

Nitrogen FixationBacteriaGenome, BacterialMexicoMicrobiotaNitrogenOperonPhylogenyPlant MucilagePlant RootsWhole Genome SequencingZea maysNitrogenPlant Mucilage

Identifiers

PMID32986754
PMCPMC7521700

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.