Evidence map›Paper›PMID 32986727›Full record

SynthesisPLoS genetics2020

Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.

Gurmannat Kalra, Beatrice Milon, Alex M Casella, Brian R Herb, Elizabeth Humphries, Yang Song, Kevin P Rose, Ronna Hertzano, Seth A Ament

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 4 pooled it
3.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 4 syntheses or guidelines pooled it, 80 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Genetic and functional evidence implicates amedRxiv : the preprint server for health sciences · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. TNFAIP8L2 maintains hair cell function and regulates age-related hearing loss via mTORC1 signaling.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Gurmannat KalraInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0002-4176-6489
Beatrice MilonDepartment of Otorhinolaryngology-Head & Neck Surgery, University of Maryland School of Medicine, Baltimore, MD, United States of America.
Alex M CasellaInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0001-6873-7867
Brian R HerbInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0002-5910-9647
Elizabeth HumphriesInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0002-2276-4066
Yang SongInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0002-2454-8498
Kevin P RoseProgram in Molecular Medicine, University of Maryland School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0003-1537-5481
Ronna HertzanoInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, United States of America.
Seth A AmentInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, United States of America.ORCID 0000-0001-6443-7509
University of Maryland, Baltimore · US

Funding

Cellular and Molecular Mechanisms of Cochlear InnervationR01DC016595 · NIDCD · GEORGETOWN UNIVERSITY · PI Thomas M Coate · 2018 to 2026
$4.4M
Cell Type Specific Transcriptional Cascades in Inner Ear DevelopmentR01DC013817 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI HERTZANO, RONNA · 2015 to 2022
$3.6M
Illuminating Neurodevelopment through Integrated Analysis and Vizualization of Multi-Omic DataR24MH114815 · NIMH · UNIVERSITY OF MARYLAND BALTIMORE · PI HERTZANO, RONNA, WHITE, OWEN R · 2018 to 2020
$2.3M
Cell Type Specific Transcriptional Cascades in Inner Ear DevelopmentU01DC013817 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI AHMED, ZUBAIR M. · 2023 to 2025
$1.6M
Wiring of Spiral Ganglion Neurons and Auditory Hair Cells by Secreted SemaphorinsR00DC013107 · NIDCD · GEORGETOWN UNIVERSITY · PI COATE, THOMAS M · 2014 to 2017
$956k
NIDCD NIH HHS R00 DC013107NIDCD NIH HHS R01 DC013817NIDCD NIH HHS U01 DC013817NIMH NIH HHS R24 MH114815
6 · The paper itself

Abstract

Age-related hearing impairment (ARHI), one of the most common medical conditions, is strongly heritable, yet its genetic causes remain largely unknown. We conducted a meta-analysis of GWAS summary statistics from multiple hearing-related traits in the UK Biobank (n = up to 330,759) and identified 31 genome-wide significant risk loci for self-reported hearing difficulty (p < 5x10-8), of which eight have not been reported previously in the peer-reviewed literature. We investigated the regulatory and cell specific expression for these loci by generating mRNA-seq, ATAC-seq, and single-cell RNA-seq from cells in the mouse cochlea. Risk-associated genes were most strongly enriched for expression in cochlear epithelial cells, as well as for genes related to sensory perception and known Mendelian deafness genes, supporting their relevance to auditory function. Regions of the human genome homologous to open chromatin in epithelial cells from the mouse were strongly enriched for heritable risk for hearing difficulty, even after adjusting for baseline effects of evolutionary conservation and cell-type non-specific regulatory regions. Epigenomic and statistical fine-mapping most strongly supported 50 putative risk genes. Of these, 39 were expressed robustly in mouse cochlea and 16 were enriched specifically in sensory hair cells. These results reveal new risk loci and risk genes for hearing difficulty and suggest an important role for altered gene regulation in the cochlear sensory epithelium.

Indexed as

Genetic LociGenetic Predisposition to DiseaseAdultAnimalsBiological Specimen BanksChromatinCochleaCohort StudiesEpigenomeEpithelial CellsFemaleGenome-Wide Association StudyHair Cells, AuditoryHearing LossHumansMice, Inbred ICRChromatin

Identifiers

PMID32986727
PMCPMC7544108
OpenAlexW3087782589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.