Evidence map›Paper›PMID 32985536›Full record

ArticleScientific reports2020

Density-based classification in diabetic retinopathy through thickness of retinal layers from optical coherence tomography.

Shariq Mohammed, Tingyang Li, Xing D Chen, Elisa Warner, Anand Shankar, Maria Fernanda Abalem, Thiran Jayasundera, Thomas W Gardner, Arvind Rao

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Shariq MohammedDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48109, USA. shariqm@umich.edu.ORCID http://orcid.org/0000-0002-3107-2969
Tingyang LiDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48109, USA.ORCID http://orcid.org/0000-0003-2559-184X
Xing D ChenDepartment of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, 48105, USA.
Elisa WarnerDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48109, USA.ORCID http://orcid.org/0000-0001-6694-2701
Anand ShankarDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48109, USA.
Maria Fernanda AbalemDepartment of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, 48105, USA.
Thiran JayasunderaDepartment of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, 48105, USA.
Thomas W GardnerDepartment of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, 48105, USA.
Arvind RaoDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, 48109, USA. ukarvind@umich.edu.
University of Michigan · US

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Integrated Systems Biology Approach to Diabetic Microvascular ComplicationsR24DK082841 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABCOUWER, STEVEN F, BROSIUS, FRANK C · 2008 to 2020
$13.1M
Regulation of Retinal Cell Death in DiabetesR01EY020582 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABCOUWER, STEVEN F, GARDNER, THOMAS W. · 2010 to 2018
$4.0M
Synthesizing Image-derived Heterogeneity with Genomic measurements for Assessing Disease Aggressiveness in Lower Grade GliomasR37CA214955 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KURTEK, SEBASTIAN, RAO, ARVIND · 2018 to 2024
$3.9M
Training Program in BioinformaticsT32GM070449 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID, BURMEISTER, MARGIT · 2005 to 2020
$3.6M
NCI NIH HHS R37 CA214955NCI NIH HHS R37CA214955NEI NIH HHS R01 EY020582NEI NIH HHS R01EY020582NIDDK NIH HHS P30 DK020572NIDDK NIH HHS P30DK020572NIDDK NIH HHS R24 DK082841NIDDK NIH HHS R24DK082841NIGMS NIH HHS T32 GM070449NIH HHS 5T32GM070449NIH HHS R37CA214955
6 · The paper itself

Abstract

Diabetic retinopathy (DR) is a severe retinal disorder that can lead to vision loss, however, its underlying mechanism has not been fully understood. Previous studies have taken advantage of Optical Coherence Tomography (OCT) and shown that the thickness of individual retinal layers are affected in patients with DR. However, most studies analyzed the thickness by calculating summary statistics from retinal thickness maps of the macula region. This study aims to apply a density function-based statistical framework to the thickness data obtained through OCT, and to compare the predictive power of various retinal layers to assess the severity of DR. We used a prototype data set of 107 subjects which are comprised of 38 non-proliferative DR (NPDR), 28 without DR (NoDR), and 41 controls. Based on the thickness profiles, we constructed novel features which capture the variation in the distribution of the pixel-wise retinal layer thicknesses from OCT. We quantified the predictive power of each of the retinal layers to distinguish between all three pairwise comparisons of the severity in DR (NoDR vs NPDR, controls vs NPDR, and controls vs NoDR). When applied to this preliminary DR data set, our density-based method demonstrated better predictive results compared with simple summary statistics. Furthermore, our results indicate considerable differences in retinal layer structuring based on the severity of DR. We found that: (a) the outer plexiform layer is the most discriminative layer for classifying NoDR vs NPDR; (b) the outer plexiform, inner nuclear and ganglion cell layers are the strongest biomarkers for discriminating controls from NPDR; and (c) the inner nuclear layer distinguishes best between controls and NoDR.

Indexed as

BiomarkersBlood GlucoseDiabetes Mellitus, Type 1Diabetes Mellitus, Type 2Diabetic RetinopathyDisease ProgressionFemaleFollow-Up StudiesHumansMaleMiddle AgedNerve FibersPrognosisRetinaTomography, Optical CoherenceBiomarkersBlood Glucose

Identifiers

PMID32985536
PMCPMC7522225
OpenAlexW3088059674

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.