ArticleScientific reports2020
Understanding salt tolerance mechanism using transcriptome profiling and de novo assembly of wild tomato Solanum chilense.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 63 citations in OpenAlex.
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- Genome-wide study of salt tolerance in USDA tomato germplasm at seedling stage.Scientific reports · 2025Article
- Nanofertilizers for Sustainable African Agriculture: A Global Review of Agronomic Efficiency and Environmental Sustainability.Nanomaterials (Basel, Switzerland) · 2025Review
- Physiology of salt tolerance introgressions fromFrontiers in plant science · 2025Article
- Omics-Driven Strategies for Developing Saline-Smart Lentils: A Comprehensive Review.International journal of molecular sciences · 2024Review
- An Integrated Multi-Omics and Artificial Intelligence Framework for Advance Plant Phenotyping in Horticulture.Biology · 2023Review
- Comparative Transcriptomics of Multi-Stress Responses inInternational journal of molecular sciences · 2023Article
- Seed Priming with MeJa Prevents Salt-Induced Growth Inhibition and Oxidative Damage inInternational journal of molecular sciences · 2023Article
- Insights into the Transcriptomics of Crop Wild Relatives to Unravel the Salinity Stress Adaptive Mechanisms.International journal of molecular sciences · 2023Review
- Petunia as a model for MYB transcription factor action under salt stress.Frontiers in plant science · 2023Article
- Salt tolerance mechanisms in theAoB PLANTS · 2022Review
- Integrated metabolomic and transcriptomic analysis reveals the role of phenylpropanoid biosynthesis pathway in tomato roots during salt stress.Frontiers in plant science · 2022Article
- Modifying Anthocyanins Biosynthesis in Tomato Hairy Roots: A Test Bed for Plant Resistance to Ionizing Radiation and Antioxidant Properties in Space.Frontiers in plant science · 2022Article
- Tomato salt tolerance mechanisms and their potential applications for fighting salinity: A review.Frontiers in plant science · 2022Review
- Molecular insights into mechanisms underlying thermo-tolerance in tomato.Frontiers in plant science · 2022Review
- GmDREB6, a soybean transcription factor, notably affects the transcription of theSaudi journal of biological sciences · 2021Article
- Comparison of Drought and Heat Resistance Strategies among Six Populations ofPlants (Basel, Switzerland) · 2021Article
- The Effects of Salinity on the Anatomy and Gene Expression Patterns in Leaflets of Tomato cv. Micro-Tom.Genes · 2021Article
- Morpho-Physiological, Biochemical, and Genetic Responses to Salinity inPlants (Basel, Switzerland) · 2021Article
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Authors and funding
5 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soil salinity affects the plant growth and productivity detrimentally, but Solanum chilense, a wild relative of cultivated tomato (Solanum lycopersicum L.), is known to have exceptional salt tolerance. It has precise adaptations against direct exposure to salt stress conditions. Hence, a better understanding of the mechanism to salinity stress tolerance by S. chilense can be accomplished by comprehensive gene expression studies. In this study 1-month-old seedlings of S. chilense and S. lycopersicum were subjected to salinity stress through application of sodium chloride (NaCl) solution. Through RNA-sequencing here we have studied the differences in the gene expression patterns. A total of 386 million clean reads were obtained through RNAseq analysis using the Illumina HiSeq 2000 platform. Clean reads were further assembled de novo into a transcriptome dataset comprising of 514,747 unigenes with N50 length of 578 bp and were further aligned to the public databases. Genebank non-redundant (Nr), Viridiplantae, Gene Ontology (GO), KOG, and KEGG databases classification suggested enrichment of these unigenes in 30 GO categories, 26 KOG, and 127 pathways, respectively. Out of 265,158 genes that were differentially expressed in response to salt treatment, 134,566 and 130,592 genes were significantly up and down-regulated, respectively. Upon placing all the differentially expressed genes (DEG) in known signaling pathways, it was evident that most of the DEGs involved in cytokinin, ethylene, auxin, abscisic acid, gibberellin, and Ca
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