Evidence map›Paper›PMID 32985505›Full record

ArticleNature communications2020

STAT5 promotes accessibility and is required for BATF-mediated plasticity at the Il9 locus.

Yongyao Fu, Jocelyn Wang, Gayathri Panangipalli, Benjamin J Ulrich, Byunghee Koh, Chengxian Xu, Rakshin Kharwadkar, Xiaona Chu, Yue Wang, Hongyu Gao and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
  6. Article
  7. UFL1 promotes survival and function of virtual memory CD8 T cells.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  8. Review
  9. Review
  10. Article
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  13. Review
  14. Article
  15. Article
  16. Review
  17. The World according to IL-9.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Article
  18. Article
  19. The Dichotomy of Interleukin-9 Function in the Tumor Microenvironment.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Yongyao FuDepartment of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Jocelyn WangDepartment of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.ORCID http://orcid.org/0000-0003-0016-3136
Gayathri PanangipalliDepartment of Biohealth Informatics, School of Informatics and Computing, Indiana University-Purdue University, Indianapolis, IN, 46202, USA.
Benjamin J UlrichDepartment of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Byunghee KohDepartment of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Chengxian XuDepartment of Pediatrics and Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Rakshin KharwadkarDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Xiaona ChuDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Yue WangDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Hongyu GaoDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Wenting WuDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Jie SunDepartment of Medicine, Mayo Clinic, Rochester, MN, 55905, USA.
Robert S TepperDepartment of Pediatrics and Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Baohua ZhouDepartment of Pediatrics and Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.ORCID http://orcid.org/0000-0003-1156-4517
Sarath Chandra JangaDepartment of Biohealth Informatics, School of Informatics and Computing, Indiana University-Purdue University, Indianapolis, IN, 46202, USA.
Kai YangDepartment of Pediatrics and Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Mark H KaplanDepartment of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, IN, 46202, USA. mkaplan2@iupui.edu.ORCID http://orcid.org/0000-0002-2923-8245
Indiana University School of MedicineIndiana University – Purdue University Indianapolis · USMayo Clinic in Arizona · US

Funding

Tumor Microenvironment and Metastasis ProgramP30CA082709 · NCI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI Sara K Quinney · 1999 to 2026
$59.3M
Project-005U54DK106846 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI Reuben Kapur, Karen Elizabeth Pollok · 2015 to 2026
$9.7M
The role of PU.1 in T helper cell heterogeneityR01AI057459 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI KAPLAN, MARK H · 2005 to 2025
$8.2M
Immunology and Infectious Diseases Training ProgramT32AI060519 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI MARK H KAPLAN · 2004 to 2026
$6.0M
Indiana Medical Scientist/Engineer Training ProgramT32GM077229 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI GASTON, BENJAMIN, HERBERT, BRITTNEY-SHEA · 2008 to 2022
$6.0M
TSLP in Th2 Immunity and Allergic Airway InflammationR01AI085046 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI ZHOU, BAOHUA · 2010 to 2019
$3.8M
Identification of regulatory elements in the Il9 geneR03AI135356 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI KAPLAN, MARK H · 2018 to 2019
$158k
IL-9-secreting tissue-resident memory T cells in allergic airway diseaseF30HL147515 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI ULRICH, BENJAMIN · 2019 to 2019
$30k
NCI NIH HHS P30 CA082709NHLBI NIH HHS F30 HL147515NIAID NIH HHS R01 AI057459NIAID NIH HHS R01 AI085046NIAID NIH HHS R03 AI135356NIAID NIH HHS T32 AI060519NIDDK NIH HHS U54 DK106846NIGMS NIH HHS T32 GM077229
6 · The paper itself

Abstract

T helper cell differentiation requires lineage-defining transcription factors and factors that have shared expression among multiple subsets. BATF is required for development of multiple Th subsets but functions in a lineage-specific manner. BATF is required for IL-9 production in Th9 cells but in contrast to its function as a pioneer factor in Th17 cells, BATF is neither sufficient nor required for accessibility at the Il9 locus. Here we show that STAT5 is the earliest factor binding and remodeling the Il9 locus to allow BATF binding in both mouse and human Th9 cultures. The ability of STAT5 to mediate accessibility for BATF is observed in other Th lineages and allows acquisition of the IL-9-secreting phenotype. STAT5 and BATF convert Th17 cells into cells that mediate IL-9-dependent effects in allergic airway inflammation and anti-tumor immunity. Thus, BATF requires the STAT5 signal to mediate plasticity at the Il9 locus.

Indexed as

AnimalsBasic-Leucine Zipper Transcription FactorsCell DifferentiationFemaleHumansInterleukin-9MaleMiceMice, Inbred C57BLMice, KnockoutSTAT5 Transcription FactorTh17 CellsT-Lymphocytes, Helper-InducerBasic-Leucine Zipper Transcription FactorsBATF protein, humanBatf protein, mouseInterleukin-9STAT5 Transcription Factor

Identifiers

PMID32985505
PMCPMC7523001
OpenAlexW3088302432

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.