Evidence map›Paper›PMID 32985172›Full record

ArticleAnalytical chemistry2020

Automating and Extending Comprehensive Two-Dimensional Gas Chromatography Data Processing by Interfacing Open-Source and Commercial Software.

Michael J Wilde, Bo Zhao, Rebecca L Cordell, Wadah Ibrahim, Amisha Singapuri, Neil J Greening, Chris E Brightling, Salman Siddiqui, Paul S Monks, Robert C Free

Abstract read
In one paragraph

Article in Analytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. INdoor Home Air Level Exploration (INHALE) Study: Protocol to Monitor Indoor Pollution in British Dwellings.International journal of environmental research and public health · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Michael J WildeSchool of Chemistry, University of Leicester, University Road, Leicester LE1 7RH, U.K.ORCID 0000-0003-0726-890X
Bo ZhaoLeicester NIHR Biomedical Research Centre, Glenfield Hospital, Groby Road, Leicester LE3 9QP, U.K.
Rebecca L CordellSchool of Chemistry, University of Leicester, University Road, Leicester LE1 7RH, U.K.
Wadah IbrahimDepartment of Respiratory Sciences, University of Leicester, University Road, Leicester LE1 7RH, U.K.
Amisha SingapuriDepartment of Respiratory Sciences, University of Leicester, University Road, Leicester LE1 7RH, U.K.
Neil J GreeningDepartment of Respiratory Sciences, University of Leicester, University Road, Leicester LE1 7RH, U.K.
Chris E BrightlingDepartment of Respiratory Sciences, University of Leicester, University Road, Leicester LE1 7RH, U.K.
Salman SiddiquiDepartment of Respiratory Sciences, University of Leicester, University Road, Leicester LE1 7RH, U.K.
Paul S MonksSchool of Chemistry, University of Leicester, University Road, Leicester LE1 7RH, U.K.
Robert C FreeLeicester NIHR Biomedical Research Centre, Glenfield Hospital, Groby Road, Leicester LE3 9QP, U.K.

Funding

Department of Health PDF-2017-10-052Medical Research Council MR/N005880/1Wellcome Trust
6 · The paper itself

Abstract

Comprehensive two-dimensional gas chromatography (GC×GC) is a powerful analytical tool for both nontargeted and targeted analyses. However, there is a need for more integrated workflows for processing and managing the resultant high-complexity datasets. End-to-end workflows for processing GC×GC data are challenging and often require multiple tools or software to process a single dataset. We describe a new approach, which uses an existing underutilized interface within commercial software to integrate free and open-source/external scripts and tools, tailoring the workflow to the needs of the individual researcher within a single software environment. To demonstrate the concept, the interface was successfully used to complete a first-pass alignment on a large-scale GC×GC metabolomics dataset. The analysis was performed by interfacing bespoke and published external algorithms within a commercial software environment to automatically correct the variation in retention times captured by a routine reference standard. Variation in

Indexed as

SoftwareAlgorithmsAutomationChromatography, GasMetabolomics

Identifiers

PMID32985172
PMCPMC7644112

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.