Evidence map›Paper›PMID 32981460›Full record

ArticleSLAS discovery : advancing life sciences R & D2020

Discovery of Drug-Like Ligands for the Mac1 Domain of SARS-CoV-2 Nsp3.

Rajdeep S Virdi, Robert V Bavisotto, Nicholas C Hopper, Nemanja Vuksanovic, Trevor R Melkonian, Nicholas R Silvaggi, David N Frick

Open access · hybridAbstract read
In one paragraph

Article in SLAS discovery : advancing life sciences R & D, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. SARS-CoV-2 Mac1 is required for IFN antagonism and efficient virus replication in cell culture and in mice.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Intracellular mono-ADP-ribosyltransferases at the host-virus interphase.Cellular and molecular life sciences : CMLS · 2022
    Review
  14. Article
  15. Structural biology of SARS-CoV-2: open the door for novel therapies.Signal transduction and targeted therapy · 2022
    Review
  16. Article
  17. Article
  18. Recent advances in drug repurposing using machine learning.Current opinion in chemical biology · 2021
    Review
  19. Global variation in SARS-CoV-2 proteome and its implication in pre-lockdown emergence and dissemination of 5 dominant SARS-CoV-2 clades.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  20. Host ADP-ribosylation and the SARS-CoV-2 macrodomain.Biochemical Society transactions · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Rajdeep S VirdiDepartment of Chemistry and Biochemistry, The University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Robert V BavisottoDepartment of Chemistry and Biochemistry, The University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Nicholas C HopperDepartment of Chemistry and Biochemistry, The University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Nemanja VuksanovicDepartment of Chemistry and Biochemistry, The University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Trevor R MelkonianDepartment of Chemistry and Biochemistry, The University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Nicholas R SilvaggiDepartment of Chemistry and Biochemistry, The University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
David N FrickDepartment of Chemistry and Biochemistry, The University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID 0000-0002-2434-7223
University of Wisconsin–Milwaukee · US

Funding

Antiviral potential of helicase inhibitorsR01AI088001 · NIAID · UNIVERSITY OF WISCONSIN MILWAUKEE · PI FRICK, DAVID N · 2010 to 2012
$1.1M
NIAID NIH HHS R01 AI088001
6 · The paper itself

Abstract

Small molecules that bind the SARS-CoV-2 nonstructural protein 3 Mac1 domain in place of ADP-ribose could be useful as molecular probes or scaffolds for COVID-19 antiviral drug discovery because Mac1 has been linked to the ability of coronaviruses to evade cellular detection. A high-throughput assay based on differential scanning fluorimetry (DSF) was therefore optimized and used to identify possible Mac1 ligands in small libraries of drugs and drug-like compounds. Numerous promising compounds included nucleotides, steroids, β-lactams, and benzimidazoles. The main drawback to this approach was that a high percentage of compounds in some libraries were found to influence the observed Mac1 melting temperature. To prioritize DSF screening hits, the shapes of the observed melting curves and initial assay fluorescence were examined, and the results were compared with virtual screens performed using AutoDock Vina. The molecular basis for alternate ligand binding was also examined by determining a structure of one of the hits, cyclic adenosine monophosphate, with atomic resolution.

Indexed as

Antiviral AgentsBinding SitesCoronavirus Papain-Like ProteasesCyclic AMPHigh-Throughput Screening AssaysLigandsModels, MolecularMolecular Docking SimulationProtein ConformationProtein DomainsSARS-CoV-2Antiviral AgentsCoronavirus Papain-Like ProteasesCyclic AMPLigandspapain-like protease, SARS-CoV-2antiviral drug targetcoronavirusCOVID-19macrodomainthermal shift

Identifiers

PMID32981460
PMCPMC7684785
OpenAlexW3088770298

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.