Evidence map›Paper›PMID 32979162›Full record

ArticleMolecular biology reports2020

DARPin Ec1-LMWP protein scaffold in targeted delivery of siRNA molecules through EpCAM cancer stem cell marker.

Nikta Babaee, Yeganeh Talebkhan Garoosi, Morteza Karimipoor, Fatemeh Davami, Elham Bayat, Hossein Safarpour, Fereidoun Mahboudi, Farzaneh Barkhordari

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Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Nikta BabaeeBiotechnology Research Center, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Yeganeh Talebkhan GaroosiBiotechnology Research Center, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran. talebkhan@pasteur.ac.ir.ORCID http://orcid.org/0000-0003-1988-4419
Morteza KarimipoorBiotechnology Research Center, Molecular Medicine Department, Pasteur Institute of Iran, Tehran, Iran. mortezakarimi@pasteur.ac.ir.
Fatemeh DavamiBiotechnology Research Center, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Elham BayatBiotechnology Research Center, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Hossein SafarpourCellular and Molecular Research Center, Birjand University of Medical Sciences, Birjand, Iran.
Fereidoun MahboudiBiotechnology Research Center, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Farzaneh BarkhordariBiotechnology Research Center, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Pasteur Institute of Iran · IRBirjand University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study is to investigate the binding ability of Designed Ankyrin Repeat Proteins type Ec1that was fused to Low Molecular Weight Protamine (DARPin Ec1-LMWP) protein scaffold to the Epithelial Cell Adhesion Molecule (EpCAM) Cancer Stem Cell (CSC) marker and its efficiency in targeted delivery of small interfering RNA (siRNA) molecules into the studied cells. Gene fragment encoding the DARPIn Ec1-LMWP fusion protein was subcloned into pET28a expression vector following molecular docking studies performed to examine the affinity of the fusion protein towards EpCAM marker. The binding of the siRNA to the expressed fusion protein was tested through native PAGE. The toxicity of the fusion protein was tested by MTT assay. Attachment of the complex to the EpCAM marker was investigated by flow cytometry and delivery of siRNA into the cells was assessed by fluorescence microscopy. The expressed 21.6 kDa DARPin Ec1-LMWP fusion protein was purified and showed no cytotoxicity on tested cells. Arginine rich LMWP was efficiently bounded to the negatively charged siRNA molecule. Successful attachment of the fusion protein:siRNA complex to the EpCAM marker and its internalization into MCF-7 breast cancer cell line were confirmed. Here for the first time the recombinant DARPin Ec1-LMWP protein scaffold was designed and tested for targeting EpCAM surface marker and successful internalization of the siRNA into MCF-7 cells.

Indexed as

Drug CarriersRecombinant Fusion ProteinsRNA, Small InterferingBiomarkers, TumorEpithelial Cell Adhesion MoleculeHeLa CellsHumansMCF-7 CellsBiomarkers, TumorDrug CarriersEPCAM protein, humanEpithelial Cell Adhesion MoleculeRecombinant Fusion ProteinsRNA, Small InterferingCSCDARPin Ec1-LMWPEpCAMsiRNA

Identifiers

PMID32979162
OpenAlexW3088466315

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.