ArticleScientific reports2020
Comparative analysis of chloroplast genomes in Vasconcellea pubescens A.DC. and Carica papaya L.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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10 citing papers in PubMed, 21 citations in OpenAlex.
- The pan-plastome of Strobilanthes cusia provided new information about the genetic diversity and cultivation history of an important medicinal and natural dye plant.BMC genomics · 2026Article
- Comparative analyses of the organelle genomes inFrontiers in plant science · 2025Article
- Comparative analysis of chloroplast genomes inFrontiers in plant science · 2025Article
- Chloroplast genomes of Eriobotrya elliptica and an unknown wild loquat "YN-1".Scientific reports · 2024Article
- Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris.Scientific reports · 2023Article
- Complete chloroplast genomes of five Cuscuta species and their evolutionary significance in the Cuscuta genus.BMC genomics · 2023Article
- Intraspecific Chloroplast Genome Variation and Domestication Origins of Major Cultivars ofGenes · 2023Article
- Application of third-generation sequencing to herbal genomics.Frontiers in plant science · 2023Review
- Analysis of the complete plastidial genome of the newly highland papayaMitochondrial DNA. Part B, Resources · 2022Article
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Corrections and comments
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The chloroplast genome is an integral part of plant genomes in a species along with nuclear and mitochondrial genomes, contributing to adaptation, diversification, and evolution of plant lineages. In the family Caricaceae, only the Carica papaya chloroplast genome and its nuclear and mitochondrial genomes were sequenced, and no chloroplast genome-wide comparison across genera was conducted. Here, we sequenced and assembled the chloroplast genome of Vasconcellea pubescens A.DC. using Oxford Nanopore Technology. The size of the genome is 158,712 bp, smaller than 160,100 bp of the C. papaya chloroplast genome. And two structural haplotypes, LSC_IRa_SSCrc_IRb and LSC_IRa_SSC_IRb, were identified in both V. pubescens and C. papaya chloroplast genomes. The insertion-deletion mutations may play an important role in Ycf1 gene evolution in family Caricaceae. Ycf2 is the only one gene positively selected in the V. pubescens chloroplast genome. In the C. papaya chloroplast genome, there are 46 RNA editing loci with an average RNA editing efficiency of 63%. These findings will improve our understanding of the genomes of these two crops in the family Caricaceae and will contribute to crop improvement.
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