Evidence map›Paper›PMID 32978386›Full record

ArticleNature communications2020

Engineering and application of a biosensor with focused ligand specificity.

Dennis Della Corte, Hugo L van Beek, Falk Syberg, Marcus Schallmey, Felix Tobola, Kai U Cormann, Christine Schlicker, Philipp T Baumann, Karin Krumbach, Sascha Sokolowsky and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

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  20. OptimizingFrontiers in microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Dennis Della CorteInstitute of Biological Information Processing, IBI-7: Structural Biochemistry, Forschungszentrum Jülich, D-52425, Jülich, Germany.
Hugo L van BeekInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.
Falk SybergProtein Crystallography, Biophysics, Ruhr University Bochum, D-44780, Bochum, Germany.
Marcus SchallmeyInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.ORCID http://orcid.org/0000-0002-6524-4191
Felix TobolaInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.ORCID http://orcid.org/0000-0002-8223-4606
Kai U CormannInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.
Christine SchlickerProtein Crystallography, Biophysics, Ruhr University Bochum, D-44780, Bochum, Germany.
Philipp T BaumannInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.
Karin KrumbachInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.
Sascha SokolowskyInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.
Connor J MorrisDepartment of Physics & Astronomy, Brigham Young University, Provo, UT, USA.ORCID http://orcid.org/0000-0002-0754-0670
Alexander GrünbergerInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany.ORCID http://orcid.org/0000-0002-7564-4957
Eckhard HofmannProtein Crystallography, Biophysics, Ruhr University Bochum, D-44780, Bochum, Germany.ORCID http://orcid.org/0000-0003-4874-372X
Gunnar F SchröderInstitute of Biological Information Processing, IBI-7: Structural Biochemistry, Forschungszentrum Jülich, D-52425, Jülich, Germany.ORCID http://orcid.org/0000-0003-1803-5431
Jan MarienhagenInstitute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum Jülich, D-52425, Jülich, Germany. j.marienhagen@fz-juelich.de.ORCID http://orcid.org/0000-0001-5513-3730

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell factories converting bio-based precursors to chemicals present an attractive avenue to a sustainable economy, yet screening of genetically diverse strain libraries to identify the best-performing whole-cell biocatalysts is a low-throughput endeavor. For this reason, transcriptional biosensors attract attention as they allow the screening of vast libraries when used in combination with fluorescence-activated cell sorting (FACS). However, broad ligand specificity of transcriptional regulators (TRs) often prohibits the development of such ultra-high-throughput screens. Here, we solve the structure of the TR LysG of Corynebacterium glutamicum, which detects all three basic amino acids. Based on this information, we follow a semi-rational engineering approach using a FACS-based screening/counterscreening strategy to generate an L-lysine insensitive LysG-based biosensor. This biosensor can be used to isolate L-histidine-producing strains by FACS, showing that TR engineering towards a more focused ligand spectrum can expand the scope of application of such metabolite sensors.

Indexed as

LigandsAmino Acid Transport Systems, BasicBacterial ProteinsBiosensing TechniquesCorynebacterium glutamicumCrystallographyFlow CytometryHigh-Throughput Screening AssaysLysineMetabolic EngineeringMicrofluidic Analytical TechniquesModels, MolecularProtein ConformationProtein DomainsThermodynamicsAmino Acid Transport Systems, BasicBacterial ProteinsLigandsLysG protein, Corynebacterium glutamicumLysine

Identifiers

PMID32978386
PMCPMC7519686

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.