Evidence map›Paper›PMID 32978154›Full record

ArticleScience advances2020

Programmable low-cost DNA-based platform for viral RNA detection.

Lifeng Zhou, Arun Richard Chandrasekaran, Jibin Abraham Punnoose, Gaston Bonenfant, Stephon Charles, Oksana Levchenko, Pheonah Badu, Cassandra Cavaliere, Cara T Pager, Ken Halvorsen

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Aptamer-based DNA nanoswitches for multiplexed protein detection.Chemical communications (Cambridge, England) · 2026
    Article
  3. Article
  4. Article
  5. Aptamer-based DNA nanoswitches for multiplexed protein detection.bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Enzyme Fragment Complementation Driven by Nucleic Acid Hybridization.bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Detection methods targeting the positive- and negative-sense RNA transcripts from plus-stranded RNA viruses.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2022
    Article
  19. Aptamers for Viral Detection and Inhibition.ACS infectious diseases · 2022
    Review
  20. Single species RNA purification using DNA nanoswitches.Trends in biochemical sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Lifeng ZhouThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0001-5479-3681
Arun Richard ChandrasekaranThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0001-6757-5464
Jibin Abraham PunnooseThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0003-2367-6874
Gaston BonenfantThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0002-0081-7470
Stephon CharlesThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0001-6253-8672
Oksana LevchenkoThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0002-5460-338X
Pheonah BaduThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.
Cassandra CavaliereThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0002-8990-8490
Cara T PagerThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA. ctpager@albany.edu khalvorsen@albany.edu.ORCID 0000-0003-2024-3782
Ken HalvorsenThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA. ctpager@albany.edu khalvorsen@albany.edu.ORCID 0000-0002-2578-1339
Albany State University · US

Funding

Manipulating nucleic acids: applications in RNA biosensing, single-molecule analysis, and DNA nanotechnologyR35GM124720 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI Ken A Halvorsen · 2017 to 2026
$4.6M
Modulation of RNA modifications by RNA virusesR01GM123050 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI FABRIS, DANIELE, PAGER, CARA THERESIA · 2018 to 2021
$1.9M
Role of Post-transcription RNA Modifications on Zika Virus Gene ExpressionR21AI133617 · NIAID · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI FABRIS, DANIELE, PAGER, CARA THERESIA · 2017 to 2018
$486k
NIAID NIH HHS R21 AI133617NIGMS NIH HHS R01 GM123050NIGMS NIH HHS R35 GM124720
6 · The paper itself

Abstract

Detection of viruses is critical for controlling disease spread. Recent emerging viral threats, including Zika virus, Ebola virus, and SARS-CoV-2 responsible for coronavirus disease 2019 (COVID-19) highlight the cost and difficulty in responding rapidly. To address these challenges, we develop a platform for low-cost and rapid detection of viral RNA with DNA nanoswitches that mechanically reconfigure in response to specific viruses. Using Zika virus as a model system, we show nonenzymatic detection of viral RNA with selective and multiplexed detection between related viruses and viral strains. For clinical-level sensitivity in biological fluids, we paired the assay with sample preparation using either RNA extraction or isothermal preamplification. Our assay requires minimal laboratory infrastructure and is adaptable to other viruses, as demonstrated by quickly developing DNA nanoswitches to detect SARS-CoV-2 RNA in saliva. Further development and field implementation will improve our ability to detect emergent viral threats and ultimately limit their impact.

Indexed as

Base SequenceBetacoronavirusCell Line, TumorCoronavirus InfectionsCOVID-19DengueDengue VirusDNA, Single-StrandedElectrophoresis, Agar GelHumansLimit of DetectionPandemicsPneumonia, ViralRNA, ViralSalivaSARS-CoV-2DNA, Single-StrandedRNA, Viral

Identifiers

PMID32978154
PMCPMC7518872
OpenAlexW3080536083

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.