Evidence map›Paper›PMID 32977700›Full record

ArticleGenes2020

A Pan-Genome Guided Metabolic Network Reconstruction of Five

Tim McCubbin, R Axayacatl Gonzalez-Garcia, Robin W Palfreyman, Chris Stowers, Lars K Nielsen, Esteban Marcellin

Abstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. A single-nucleotide variant conditions the ability vs. inability ofApplied and environmental microbiology · 2025
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. NAR genomics and bioinformatics · 2024
    Article
  11. DistinctFrontiers in microbiomes · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Genome-scale metabolic modeling andFrontiers in cellular and infection microbiology · 2023
    Article
  16. Article
  17. Article
  18. Review
  19. Antibacterial Activity of the Essential Oil FromFrontiers in microbiology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tim McCubbinAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD 4072, Australia.
R Axayacatl Gonzalez-GarciaAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD 4072, Australia.
Robin W PalfreymanAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD 4072, Australia.ORCID 0000-0002-1088-7069
Chris StowersCorteva Agriscience, Indianapolis, IN 46268, USA.
Lars K NielsenAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD 4072, Australia.ORCID 0000-0001-8191-3511
Esteban MarcellinAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD 4072, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Propionibacteria have been studied extensively since the early 1930s due to their relevance to industry and importance as human pathogens. Still, their unique metabolism is far from fully understood. This is partly due to their signature high GC content, which has previously hampered the acquisition of quality sequence data, the accurate annotation of the available genomes, and the functional characterization of genes. The recent completion of the genome sequences for several species has led researchers to reassess the taxonomical classification of the genus

Indexed as

Gene Expression Regulation, BacterialGenome, BacterialMetabolic Networks and PathwaysBacterial ProteinsBase CompositionChromosome MappingChromosomes, BacterialDNA, BacterialHumansPhylogenyPropionibacteriumBacterial ProteinsDNA, BacterialAcidipropionibacteriumCutibacteriumgenome-scale modelKBasepan-genomepropionibacteriaPropionibacteriumpropionic acidRASTre-annotation

Identifiers

PMID32977700
PMCPMC7650540

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.