Evidence map›Paper›PMID 32977500›Full record

ArticleInternational journal of molecular sciences2020

Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice.

Yukimoto Iwasaki, Takafumi Itoh, Yusuke Hagi, Sakura Matsuta, Aki Nishiyama, Genki Chaya, Yuki Kobayashi, Kotaro Miura, Setsuko Komatsu

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yukimoto IwasakiDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Takafumi ItohDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Yusuke HagiDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Sakura MatsutaDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Aki NishiyamaDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Genki ChayaDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Yuki KobayashiDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Kotaro MiuraDepartment of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan.
Setsuko KomatsuDepartment of Environmental and Food Sciences, Fukui University of Technology, Fukui 910-8505, Japan.ORCID 0000-0002-4514-357X
Fukui Prefectural University · JPFukui University of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plasma membrane regulates biological processes such as ion transport, signal transduction, endocytosis, and cell differentiation/proliferation. To understand the functional characteristics and organ specificity of plasma membranes, plasma membrane protein fractions from rice root, etiolated leaf, green leaf, developing leaf sheath, and flower were analyzed by proteomics. Among the proteins identified, 511 were commonly accumulated in the five organs, whereas 270, 132, 359, 146, and 149 proteins were specifically accumulated in the root, etiolated leaf, green leaf, developing leaf sheath, and developing flower, respectively. The principle component analysis revealed that the functions of the plasma membrane in the root was different from those of green and etiolated leaves and that the plasma membrane protein composition of the leaf sheath was similar to that of the flower, but not that of the green leaf. Functional classification revealed that the root plasma membrane has more transport-related proteins than the leaf plasma membrane. Furthermore, the leaf sheath and flower plasma membranes were found to be richer in proteins involved in signaling and cell function than the green leaf plasma membrane. To validate the proteomics data, immunoblot analysis was carried out, focusing on four heterotrimeric G protein subunits, Gα, Gβ, Gγ1, and Gγ2. All subunits could be detected by both methods and, in particular, Gγ1 and Gγ2 required concentration by immunoprecipitation for mass spectrometry detection.

Indexed as

Gene Expression Regulation, PlantFlowersOryzaPlant LeavesPlant ProteinsPlant RootsProteomicsPlant Proteinsheterotrimeric G proteinorgan specificityplasma membraneproteomicsrice

Identifiers

PMID32977500
PMCPMC7583858
OpenAlexW3089119809

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.