Evidence map›Paper›PMID 32975580›Full record

ArticleFEMS microbiology letters2020

Aerobic microbial communities in the sediments of a marine oxygen minimum zone.

Sabyasachi Bhattacharya, Chayan Roy, Subhrangshu Mandal, Jagannath Sarkar, Moidu Jameela Rameez, Nibendu Mondal, Tarunendu Mapder, Sumit Chatterjee, Prosenjit Pyne, Masrure Alam and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in FEMS microbiology letters, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Sabyasachi BhattacharyaDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Chayan RoyDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Subhrangshu MandalDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Jagannath SarkarDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Moidu Jameela RameezDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Nibendu MondalDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Tarunendu MapderDepartment of Chemistry, Bose Institute, 93/1 APC Road, Kolkata 700009, India.
Sumit ChatterjeeDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Prosenjit PyneDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Masrure AlamDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Prabir Kumar HaldarDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Rimi RoyDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Svetlana FernandesGas Hydrate Research Group, Geological Oceanography, CSIR-National Institute of Oceanography, Dona Paula, Goa 403004, India.
Aditya PeketiGas Hydrate Research Group, Geological Oceanography, CSIR-National Institute of Oceanography, Dona Paula, Goa 403004, India.
Ranadhir ChakrabortyDepartment of Biotechnology, University of North Bengal, Raja Rammohanpur, District - Darjeeling, West Bengal 734013, India.
Aninda MazumdarGas Hydrate Research Group, Geological Oceanography, CSIR-National Institute of Oceanography, Dona Paula, Goa 403004, India.
Wriddhiman GhoshDepartment of Microbiology, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700054, India.
Bose Institute · INNational Institute of Oceanography · INNorth Bengal University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ecology of aerobic microorganisms is never explored in marine oxygen minimum zone (OMZ) sediments. Here we reveal aerobic bacterial communities along ∼3 m sediment-horizons of the eastern Arabian Sea OMZ. Sulfide-containing sediment-cores retrieved from 530 mbsl (meters beneath the sea-level) and 580 mbsl were explored at 15-30 cm intervals, using metagenomics, pure-culture-isolation, genomics and metatranscriptomics. Genes for aerobic respiration, and oxidation of methane/ammonia/alcohols/thiosulfate/sulfite/organosulfur-compounds, were detected in the metagenomes from all 25 sediment-samples explored. Most probable numbers for aerobic chemolithoautotrophs and chemoorganoheterotrophs at individual sample-sites were up to 1.1 × 107 (g sediment)-1. The sediment-sample collected from 275 cmbsf (centimeters beneath the seafloor) of the 530-mbsl-core yielded many such obligately aerobic isolates belonging to Cereibacter, Guyparkeria, Halomonas, Methylophaga, Pseudomonas and Sulfitobacter which died upon anaerobic incubation, despite being provided with all possible electron acceptors and fermentative substrates. High percentages of metatranscriptomic reads from the 275 cmbsf sediment-sample, and metagenomic reads from all 25 sediment-samples, matched the isolates' genomic sequences including those for aerobic metabolisms, genetic/environmental information processing and cell division, thereby illustrating the bacteria's in-situ activity, and ubiquity across the sediment-horizons, respectively. The findings hold critical implications for organic carbon sequestration/remineralization, and inorganic compounds oxidation, within the sediment realm of global marine OMZs.

Indexed as

AerobiosisAquatic OrganismsBacteriaGeologic SedimentsMicrobiotaOceans and SeasOxygenOxygenaerobic microorganismsArabian Sea oxygen minimum zonegenomicsmarine hypoxic zone sedimentsmetaomicssulfur-oxidizing chemolithotrophs

Identifiers

PMID32975580
PMCPMC7568448
OpenAlexW3087901129

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.