Evidence map›Paper›PMID 32975360›Full record

ArticleCellular microbiology2021

Rab7D small GTPase is involved in phago-, trogocytosis and cytoskeletal reorganization in the enteric protozoan Entamoeba histolytica.

Yumiko Saito-Nakano, Ratna Wahyuni, Kumiko Nakada-Tsukui, Kentaro Tomii, Tomoyoshi Nozaki

Open access · hybridAbstract read
In one paragraph

Article in Cellular microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.4field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. International journal of molecular sciences · 2024
    Article
  5. The Biological Significance of Trogocytosis.Results and problems in cell differentiation · 2024
    Article
  6. Review
  7. De Novo Transcriptome Profiling ofPathogens (Basel, Switzerland) · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Yumiko Saito-Nakano *Department of Parasitology, National Institute of Infectious Diseases, Tokyo, Japan.ORCID 0000-0002-7132-194X
Ratna Wahyuni *Department of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID 0000-0001-6791-1106
Kumiko Nakada-Tsukui *Department of Parasitology, National Institute of Infectious Diseases, Tokyo, Japan.
Kentaro TomiiArtificial Intelligence Research Center (AIRC) and Real World Big-Data Computation Open Innovation Laboratory (RWBC-OIL), National Institute of Advance Industrial Science and Technology (AIST), Tokyo, Japan.
Tomoyoshi NozakiDepartment of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID 0000-0003-1354-5133
National Institutes of Health · USAirlangga University · IDArtificial Intelligence in Medicine (Canada) · CAThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rab small GTPases regulate membrane traffic between distinct cellular compartments of all eukaryotes in a tempo-spatially specific fashion. Rab small GTPases are also involved in the regulation of cytoskeleton and signalling. Membrane traffic and cytoskeletal regulation play pivotal role in the pathogenesis of Entamoeba histolytica, which is a protozoan parasite responsible for human amebiasis. E. histolytica is unique in that its genome encodes over 100 Rab proteins, containing multiple isotypes of conserved members (e.g., Rab7) and Entamoeba-specific subgroups (e.g., RabA, B, and X). Among them, E. histolytica Rab7 is the most diversified group consisting of nine isotypes. While it was previously demonstrated that EhRab7A and EhRab7B are involved in lysosome and phagosome biogenesis, the individual roles of other Rab7 members and their coordination remain elusive. In this study, we characterised the third member of Rab7, Rab7D, to better understand the significance of the multiplicity of Rab7 isotypes in E. histolytica. Overexpression of EhRab7D caused reduction in phagocytosis of erythrocytes, trogocytosis (meaning nibbling or chewing of a portion) of live mammalian cells, and phagosome acidification and maturation. Conversely, transcriptional gene silencing of EhRab7D gene caused opposite phenotypes in phago/trogocytosis and phagosome maturation. Furthermore, EhRab7D gene silencing caused reduction in the attachment to and the motility on the collagen-coated surface. Image analysis showed that EhRab7D was occasionally associated with lysosomes and prephagosomal vacuoles, but not with mature phagosomes and trogosomes. Finally, in silico prediction of structural organisation of EhRab7 isotypes identified unique amino acid changes on the effector binding surface of EhRab7D. Taken together, our data suggest that EhRab7D plays coordinated counteracting roles: a inhibitory role in phago/trogocytosis and lyso/phago/trogosome biogenesis, and an stimulatory role in adherence and motility, presumably via interaction with unique effectors. Finally, we propose the model in which three EhRab7 isotypes are sequentially involved in phago/trogocytosis.

Indexed as

PhagocytosisAmino Acid SequenceAnimalsCHO CellsCricetulusCytoskeletonEntamoeba histolyticaEntamoebiasisGene SilencingGTP PhosphohydrolasesHumansLysosomesMembranesPhagosomesProtozoan Proteinsrab7 GTP-Binding ProteinsGTP PhosphohydrolasesProtozoan Proteinsrab7 GTP-Binding ProteinsRab7 protein, Entamoeba histolyticarab GTP-Binding ProteinscytoskeletonEntamoeba histolyticalysosomepathogenesisphagocytosisRab7Dtrogocytosisvesicular traffic

Identifiers

PMID32975360
PMCPMC7757265
OpenAlexW3088671705

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.