Evidence map›Paper›PMID 32974937›Full record

ArticleThe EMBO journal2020

Open conformation of tetraspanins shapes interaction partner networks on cell membranes.

Yihu Yang, Xiaoran Roger Liu, Zev J Greenberg, Fengbo Zhou, Peng He, Lingling Fan, Shixuan Liu, Guomin Shen, Takeshi Egawa, Michael L Gross and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 53 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Yihu YangDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.
Xiaoran Roger LiuDepartment of Chemistry, Washington University, St. Louis, MO, USA.ORCID 0000-0003-3198-1588
Zev J GreenbergDivision of Hematology and Oncology, Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Fengbo ZhouDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.
Peng HeDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.
Lingling FanDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.
Shixuan LiuDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0003-3886-144X
Guomin ShenDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-5006-2790
Takeshi EgawaDepartment of Pediatrics Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Michael L GrossDepartment of Chemistry, Washington University, St. Louis, MO, USA.
Laura G SchuettpelzDivision of Hematology and Oncology, Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Weikai LiDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-8711-1904
Washington University in St. Louis · US

Funding

TrainingP41GM103422 · NIGMS · WASHINGTON UNIVERSITY · PI GROSS, MICHAEL L · 2012 to 2019
$12.0M
STRUCTURAL AND FUNCTIONAL BASIS OF THE VITAMIN K CYCLER01HL121718 · NHLBI · WASHINGTON UNIVERSITY · PI Weikai Li · 2014 to 2026
$5.2M
The transcription factor c-MYC in lymphocyte expansion and restriction of stemnessR01AI130152 · NIAID · WASHINGTON UNIVERSITY · PI Takeshi Egawa · 2017 to 2026
$4.6M
NEW CHEMICAL PROBES ENABLE MASS SPECTROMETRY-BASED FOOTPRINTING OF HUMAN PROTEIN STRUCTURE IN LIPID MEMBRANES AND CELLSR01GM131008 · NIGMS · WASHINGTON UNIVERSITY · PI MICHAEL L GROSS, Weikai Li · 2019 to 2026
$3.8M
Structural and Biochemical Basis of the Vitamin K cycleR00HL097083 · NHLBI · WASHINGTON UNIVERSITY · PI LI, WEIKAI · 2011 to 2013
$735k
STRUCTURAL BASIS OF SCHNYDER CORNEAL DYSTROPHYR21EY028705 · NEI · WASHINGTON UNIVERSITY · PI LI, WEIKAI, WEISS, JAYNE S · 2018 to 2019
$424k
Structural and Biochemical Basis of the Vitamin K cycleK99HL097083 · NHLBI · HARVARD MEDICAL SCHOOL · PI LI, WEIKAI · 2009 to 2010
$180k
Children's Discovery Institute (CDI) MCII 2020-854Leukemia & Lymphoma SocietyNEI NIH HHS R21 EY028705NHLBI NIH HHS K99 HL097083NHLBI NIH HHS R00 HL097083NHLBI NIH HHS R01 HL121718NIAID NIH HHS R01 AI130152NIGMS NIH HHS P41 GM103422NIGMS NIH HHS R01 GM131008W. M. Keck Foundation (Forefront of Science Award)
6 · The paper itself

Abstract

Tetraspanins, including CD53 and CD81, regulate a multitude of cellular processes through organizing an interaction network on cell membranes. Here, we report the crystal structure of CD53 in an open conformation poised for partner interaction. The large extracellular domain (EC2) of CD53 protrudes away from the membrane surface and exposes a variable region, which is identified by hydrogen-deuterium exchange as the common interface for CD53 and CD81 to bind partners. The EC2 orientation in CD53 is supported by an extracellular loop (EC1). At the closed conformation of CD81, however, EC2 disengages from EC1 and rotates toward the membrane, thereby preventing partner interaction. Structural simulation shows that EC1-EC2 interaction also supports the open conformation of CD81. Disrupting this interaction in CD81 impairs the accurate glycosylation of its CD19 partner, the target for leukemia immunotherapies. Moreover, EC1 mutations in CD53 prevent the chemotaxis of pre-B cells toward a chemokine that supports B-cell trafficking and homing within the bone marrow, a major CD53 function identified here. Overall, an open conformation is required for tetraspanin-partner interactions to support myriad cellular processes.

Indexed as

Cell MovementTetraspanin 25Tetraspanin 28AnimalsAntigens, CD19HumansMiceMice, KnockoutPrecursor Cells, B-LymphoidProtein DomainsAntigens, CD19CD19 antigen, mouseCD19 molecule, humanCD53 protein, humanCd53 protein, mouseCD81 protein, humanCd81 protein, mouseTetraspanin 25Tetraspanin 28CD19CD53CD81cell migrationtetraspanin

Identifiers

PMID32974937
PMCPMC7507038
OpenAlexW3049044502

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.