Evidence map›Paper›PMID 32974843›Full record

ArticleMolecular biology reports2020

Development of loop-mediated isothermal amplification assay for rapid detection of genetically different wheat dwarf virus isolates.

Katarzyna Trzmiel, Beata Hasiów-Jaroszewska

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Katarzyna TrzmielDepartment of Virology and Bacteriology, Institute of Plant Protection-National Research Institute (IPP-NRI), ul. Wł. Węgorka 20, 60-318, Poznań, Poland. k.trzmiel@iorpib.poznan.pl.ORCID http://orcid.org/0000-0001-5632-6315
Beata Hasiów-JaroszewskaDepartment of Virology and Bacteriology, Institute of Plant Protection-National Research Institute (IPP-NRI), ul. Wł. Węgorka 20, 60-318, Poznań, Poland.ORCID http://orcid.org/0000-0002-8267-023X
Institute of Plant Protection · PL

Funding

Ministerstwo Nauki i Szkolnictwa Wyższego WIB01
6 · The paper itself

Abstract

Wheat dwarf virus (WDV) is considered as one of the most common viruses on cereal crops. Recently, severe outbreaks of WDV have been observed especially on winter wheat in southwestern part of Poland. Moreover, the presence of genetically different WDV-barley-specific and WDV-wheat-specific forms (WDV-B and WDV-W, respectively) was confirmed. In this study, a loop-mediated isothermal amplification assay (LAMP) was developed for the first time for efficient and rapid detection of WDV-B and WDV-W in infected plants. The reaction was performed using a set of three primer pairs: WDVF3/WDVB3, WDVFIB/WDVBIP and WDVLoopF/WDVLoopB specific for coat protein coding sequence. The amplified products were analyzed by direct staining of DNA, gel electrophoresis and real-time monitoring of the amplification curves. The sensitivity of optimized reaction was tenfold higher in comparison with conventional PCR. LAMP assay developed here is a useful and practical method for the rapid detection of different WDV isolates and can be implemented by phytosanitary services.

Indexed as

Molecular Diagnostic TechniquesNucleic Acid Amplification TechniquesPhylogenyPlant DiseasesGeminiviridaeHordeumTriticaleTriticumBarleyIdentificationLAMP techniqueWDV-BWDV-WWheat

Identifiers

PMID32974843
PMCPMC7588376
OpenAlexW3089234292

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.