Evidence map›Paper›PMID 32974586›Full record

ArticleAccess microbiology2020

Transcriptome profiling of

Richard J Fredendall, Jenny L Stone, Michael J Pehl, Paul M Orwin

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Access microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Richard J FredendallBiology Department, California State University San Bernardino, San Bernardino, CA, USA.
Jenny L StoneBiology Department, California State University San Bernardino, San Bernardino, CA, USA.
Michael J PehlBiology Department, California State University San Bernardino, San Bernardino, CA, USA.
Paul M OrwinBiology Department, California State University San Bernardino, San Bernardino, CA, USA.
California State University, San Bernardino · US

Funding

CSUSB RISE ProgramR25GM100829 · NIGMS · CALIFORNIA STATE UNIV SAN BERNARDINO · PI CRAWFORD, CYNTHIA A. · 2013 to 2017
$2.0M
Investigation of Genetic, Biochemical,and Regulatory Aspects of Surface Motility and Anti-Staphylococcal Activity in Variovorax paradoxus EPSR15GM116173 · NIGMS · CALIFORNIA STATE UNIV SAN BERNARDINO · PI ORWIN, PAUL M · 2015 to 2015
$289k
Analysis of surface behavior determinants in Variovorax paradoxusR15GM090242 · NIGMS · CALIFORNIA STATE UNIV SAN BERNARDINO · PI ORWIN, PAUL M · 2010 to 2010
$215k
NIGMS NIH HHS R15 GM090242NIGMS NIH HHS R15 GM116173NIGMS NIH HHS R25 GM100829
6 · The paper itself

Abstract

We used transcriptome analysis by paired-end strand-specific RNA-seq to evaluate the specific changes in gene expression associated with the transition to static biofilm growth in the rhizosphere plant growth-promoting bacterium

Indexed as

BiofilmTranscriptome analysisVariovorax paradoxus

Identifiers

PMID32974586
PMCPMC7494200
OpenAlexW3014622029

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.