Evidence map›Paper›PMID 32974512›Full record

ArticleAccess microbiology2019

Application of whole genome sequencing to query a potential outbreak of

Lisa R McTaggart, Patrick J Stapleton, AliReza Eshaghi, Deirdre Soares, Sylvain Brisse, Samir N Patel, Julianne V Kus

Open access · goldAbstract read
In one paragraph

Article in Access microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Genomic profiling ofFrontiers in microbiology · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Microorganisms · 2024
    Article
  6. Characterization of an outbreak caused by Elizabethkingia miricola using Fourier-transform infrared (FTIR) spectroscopy.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  7. Review
  8. Review
  9. Genomic analysis ofCurrent research in microbial sciences · 2022
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Lisa R McTaggartPublic Health Ontario, 661 University Avenue, Toronto, ON, Canada M5G 1M1.
Patrick J StapletonPublic Health Ontario, 661 University Avenue, Toronto, ON, Canada M5G 1M1.ORCID https://orcid.org/0000-0003-4724-9121
AliReza EshaghiPublic Health Ontario, 661 University Avenue, Toronto, ON, Canada M5G 1M1.ORCID https://orcid.org/0000-0001-5150-483X
Deirdre SoaresPublic Health Ontario, 661 University Avenue, Toronto, ON, Canada M5G 1M1.
Sylvain BrisseInstitut Pasteur, Biodiversity and Epidemiology of Bacterial Pathogens, F-75724 Paris, France.ORCID https://orcid.org/0000-0002-2516-2108
Samir N PatelPublic Health Ontario, 661 University Avenue, Toronto, ON, Canada M5G 1M1.
Julianne V KusPublic Health Ontario, 661 University Avenue, Toronto, ON, Canada M5G 1M1.ORCID https://orcid.org/0000-0001-6033-7244
Public Health Ontario · CAUniversity of Toronto · CAInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bioinformatic analysis of whole genome sequence (WGS) data is emerging as a tool to provide powerful insights for clinical microbiology. We used WGS data to investigate the genetic diversity of clinical isolates of the bacterial pathogen

Indexed as

antimicrobial resistancecore genome MLSTElizabethkingia anophelisoutbreakwhole genome sequence

Identifiers

PMID32974512
PMCPMC7470347
OpenAlexW2941864504

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.