Evidence map›Paper›PMID 32973370›Full record

ArticleJournal of the American Statistical Association2020

Likelihood ratio tests for a large directed acyclic graph.

Chunlin Li, Xiaotong Shen, Wei Pan

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Statistical Association, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Discovery and inference of a causal network with hidden confounding.Journal of the American Statistical Association · 2024
    Article
  3. Nonlinear causal discovery with confounders.Journal of the American Statistical Association · 2024
    Article
  4. Functional Structural Equation Model.Journal of the Royal Statistical Society. Series B, Statistical methodology · 2022
    Article
  5. Article
  6. Testing Mediation Effects Using Logic of Boolean Matrices.Journal of the American Statistical Association · 2022
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chunlin LiSchool of Statistics, University of Minnesota, Minneapolis, MN 55455.
Xiaotong ShenSchool of Statistics, University of Minnesota, Minneapolis, MN 55455.
Wei PanDivision of Biostatistics, University of Minnesota, Minneapolis, MN 55455.
University of Minnesota · US

Funding

Powerful Inference and Prediction for Genetic AssociationR01HL105397 · NHLBI · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2011 to 2018
$2.9M
New Machine Learning Tools for Biomedical DataR01GM081535 · NIGMS · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2007 to 2014
$2.2M
Statistical Methods for Genomic and Proteomic DataR01HL065462 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI PAN, WEI · 2002 to 2012
$1.5M
Estimation and Inference of Gene Regulatory NetworksR01GM126002 · NIGMS · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2017 to 2020
$1.4M
NHLBI NIH HHS R01 HL065462NHLBI NIH HHS R01 HL105397NIGMS NIH HHS R01 GM081535NIGMS NIH HHS R01 GM126002
6 · The paper itself

Abstract

Inference of directional pairwise relations between interacting units in a directed acyclic graph (DAG), such as a regulatory gene network, is common in practice, imposing challenges because of lack of inferential tools. For example, inferring a specific gene pathway of a regulatory gene network is biologically important. Yet, frequentist inference of directionality of connections remains largely unexplored for regulatory models. In this article, we propose constrained likelihood ratio tests for inference of the connectivity as well as directionality subject to nonconvex acyclicity constraints in a Gaussian directed graphical model. Particularly, we derive the asymptotic distributions of the constrained likelihood ratios in a high-dimensional situation. For testing of connectivity, the asymptotic distribution is either chi-squared or normal depending on if the number of testable links in a DAG model is small. For testing of directionality, the asymptotic distribution is the minimum of

Indexed as

Directed acyclic graphgene networkhigh-dimensional inferenceL0-regularizationnonconvex minimization

Identifiers

PMID32973370
PMCPMC7508303
OpenAlexW2945624329

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.