Evidence map›Paper›PMID 32973211›Full record

ArticleScientific reports2020

Improvements and inter-laboratory implementation and optimization of blood-based single-locus age prediction models using DNA methylation of the ELOVL2 promoter.

Imene Garali, Mourad Sahbatou, Antoine Daunay, Laura G Baudrin, Victor Renault, Yosra Bouyacoub, Jean-François Deleuze, Alexandre How-Kit

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Article
  8. Article
  9. A cautionary note on altered pace of aging in the COVID-19 era.Forensic science international. Genetics · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Imene Garali *Laboratory for Bioinformatics, Foundation Jean Dausset-CEPH, Paris, France.
Mourad Sahbatou *Laboratory for Human Genetics, Foundation Jean Dausset-CEPH, Paris, France.
Antoine DaunayLaboratory for Genomics, Foundation Jean Dausset-CEPH, 75010, Paris, France.
Laura G BaudrinLaboratory of Excellence GenMed, Paris, France.
Victor RenaultLaboratory for Bioinformatics, Foundation Jean Dausset-CEPH, Paris, France.
Yosra BouyacoubLaboratory of Excellence GenMed, Paris, France.
Jean-François DeleuzeLaboratory for Bioinformatics, Foundation Jean Dausset-CEPH, Paris, France.
Alexandre How-KitLaboratory for Genomics, Foundation Jean Dausset-CEPH, 75010, Paris, France. alexandre.how-kit@fjd-ceph.org.
Fondation Jean Dausset-CEPH · FRDirection de la Recherche Fondamentale · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several blood-based age prediction models have been developed using less than a dozen to more than a hundred DNA methylation biomarkers. Only one model (Z-P1) based on pyrosequencing has been developed using DNA methylation of a single locus located in the ELOVL2 promoter, which is considered as one of the best age-prediction biomarker. Although multi-locus models generally present better performances compared to the single-locus model, they require more DNA and present more inter-laboratory variations impacting the predictions. Here we developed 17,018 single-locus age prediction models based on DNA methylation of the ELOVL2 promoter from pooled data of four different studies (training set of 1,028 individuals aged from 0 and 91 years) using six different statistical approaches and testing every combination of the 7 CpGs, aiming to improve the prediction performances and reduce the effects of inter-laboratory variations. Compared to Z-P1 model, three statistical models with the optimal combinations of CpGs presented improved performances (MAD of 4.41-4.77 in the testing set of 385 individuals) and no age-dependent bias. In an independent testing set of 100 individuals (19-65 years), we showed that the prediction accuracy could be further improved by using different CpG combinations and increasing the number of technical replicates (MAD of 4.17).

Indexed as

DNA MethylationLaboratoriesAdolescentAdultAgedAged, 80 and overAgingChildChild, PreschoolCpG IslandsFatty Acid ElongasesFemaleGenetic LociHumansInfantInfant, NewbornELOVL2 protein, humanFatty Acid Elongases

Identifiers

PMID32973211
PMCPMC7515898
OpenAlexW3088407313

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.