Evidence map›Paper›PMID 32970706›Full record

ArticlePloS one2020

Development and validation of a real-time RT-PCR test for screening pepper and tomato seed lots for the presence of pospiviroids.

Marleen Botermans, Johanna W Roenhorst, Marinus Hooftman, Jacobus Th J Verhoeven, Eveline Metz, Esther J van Veen, Bart P J Geraats, Mark Kemper, Debora C M Beugelsdijk, Harrie Koenraadt and 2 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Marleen BotermansNational Plant Protection Organization, Wageningen, The Netherlands.ORCID 0000-0002-7761-3855
Johanna W RoenhorstNational Plant Protection Organization, Wageningen, The Netherlands.
Marinus HooftmanNaktuinbouw, Roelofarendsveen, The Netherlands.
Jacobus Th J VerhoevenNational Plant Protection Organization, Wageningen, The Netherlands.
Eveline MetzNational Plant Protection Organization, Wageningen, The Netherlands.
Esther J van VeenNational Plant Protection Organization, Wageningen, The Netherlands.
Bart P J GeraatsBASF Vegetable Seeds, Nunhem, The Netherlands.
Mark KemperBASF Vegetable Seeds, Nunhem, The Netherlands.ORCID 0000-0003-1351-3131
Debora C M BeugelsdijkEnza Zaden Seed Operations BV, Enkhuizen, The Netherlands.
Harrie KoenraadtNaktuinbouw, Roelofarendsveen, The Netherlands.
Agata JodlowskaNaktuinbouw, Roelofarendsveen, The Netherlands.
Marcel WestenbergNational Plant Protection Organization, Wageningen, The Netherlands.ORCID 0000-0002-6458-9809
Enza Zaden (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potato spindle tuber viroid and other pospiviroids can cause serious diseases in potato and tomato crops. Consequently, pospiviroids are regulated in several countries. Since seed transmission is considered as a pathway for the introduction and spread of pospiviroids, some countries demand for the testing of seed lots of solanaceous crops for the presence of pospiviroids. A real-time RT-PCR test, named PospiSense, was developed for testing pepper (Capsicum annuum) and tomato (Solanum lycopersicum) seeds for seven pospiviroid species known to occur naturally in these crops. The test consists of two multiplex reactions running in parallel, PospiSense 1 and PospiSense 2, that target Citrus exocortis viroid (CEVd), Columnea latent viroid (CLVd), pepper chat fruit viroid (PCFVd), potato spindle tuber viroid (PSTVd), tomato apical stunt viroid (TASVd), tomato chlorotic dwarf viroid (TCDVd) and tomato planta macho viroid (TPMVd, including the former Mexican papita viroid). Dahlia latent viroid (DLVd) is used as an internal isolation control. Validation of the test showed that for both pepper and tomato seeds the current requirements of a routine screening test are fulfilled, i.e. the ability to detect one infested seed in a sample of c.1000 seeds for each of these seven pospiviroids. Additionally, the PospiSense test performed well in an inter-laboratory comparison, which included two routine seed-testing laboratories, and as such provides a relatively easy alternative to the currently used tests.

Indexed as

AgricultureCapsicumPlant DiseasesReal-Time Polymerase Chain ReactionRNA, ViralSeedsSolanum lycopersicumVegetablesViroidsRNA, Viral

Identifiers

PMID32970706
PMCPMC7514017
OpenAlexW3088891116

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.