Evidence map›Paper›PMID 32969475›Full record

ArticleJournal of experimental botany2020

Arabidopsis exoribonuclease USB1 interacts with the PPR-domain protein SOAR1 to negatively regulate abscisic acid signaling.

Yu Ma, Shang Zhang, Chao Bi, Chao Mei, Shang-Chuan Jiang, Xiao-Fang Wang, Zhi John Lu, Da-Peng Zhang

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Plant hormone regulation of abiotic stress responses.Nature reviews. Molecular cell biology · 2022
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yu MaMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Shang ZhangMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Chao BiMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Chao MeiMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Shang-Chuan JiangMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Xiao-Fang WangMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Zhi John LuMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Da-Peng ZhangMOE Key Lab of Bioinformatics, Center for Plant Biology, School of Life Sciences,Tsinghua University, Beijing, China.
Tsinghua University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Signaling by the phytohormone abscisic acid (ABA) involves pre-mRNA splicing, a key process of post-transcriptional regulation of gene expression. However, the regulatory mechanism of alternative pre-mRNA splicing in ABA signaling remains largely unknown. We previously identified a pentatricopeptide repeat protein SOAR1 (suppressor of the ABAR-overexpressor 1) as a crucial player downstream of ABAR (putative ABA receptor) in ABA signaling. In this study, we identified a SOAR1 interaction partner USB1, which is an exoribonuclease catalyzing U6 production for spliceosome assembly. We reveal that together USB1 and SOAR1 negatively regulate ABA signaling in early seedling development. USB1 and SOAR1 are both required for the splicing of transcripts of numerous genes, including those involved in ABA signaling pathways, suggesting that USB1 and SOAR1 collaborate to regulate ABA signaling by affecting spliceosome assembly. These findings provide important new insights into the mechanistic control of alternative pre-mRNA splicing in the regulation of ABA-mediated plant responses to environmental cues.

Indexed as

ArabidopsisArabidopsis ProteinsAbscisic AcidExoribonucleasesGene Expression Regulation, PlantPlant Growth RegulatorsAbscisic AcidArabidopsis ProteinsExoribonucleasesPlant Growth RegulatorsAbscisic acid signalingArabidopsis thalianaearly seedling growthexoribonuclease USB1pentatricopeptide repeat (PPR) protein SOAR1spliceosome assembly

Identifiers

PMID32969475
PMCPMC7541913
OpenAlexW3088361192

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.