Evidence map›Paper›PMID 32968874›Full record

ArticlePlanta2020

Maleic hydrazide elicits global transcriptomic changes in chemically topped tobacco to influence shoot bud development.

Sanjay K Singh, Mitchell D Richmond, Robert C Pearce, William A Bailey, Xin Hou, Sitakanta Pattanaik, Ling Yuan

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 3 countries.

Sanjay K SinghKentucky Tobacco Research and Development Center, University of Kentucky, Lexington, KY, 40546, USA.ORCID http://orcid.org/0000-0002-0835-5928
Mitchell D RichmondDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA.
Robert C PearceDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA.
William A BaileyDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA.
Xin HouKentucky Tobacco Research and Development Center, University of Kentucky, Lexington, KY, 40546, USA.
Sitakanta PattanaikKentucky Tobacco Research and Development Center, University of Kentucky, Lexington, KY, 40546, USA. spatt2@uky.edu.ORCID http://orcid.org/0000-0001-7702-8341
Ling YuanDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA. lyuan3@uky.edu.ORCID http://orcid.org/0000-0003-4767-5761
University of Kentucky · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionTranscriptomic analysis revealed maleic hydrazide suppresses apical and axillary bud development by altering the expression of genes related to meristem development, cell division, DNA replication, DNA damage and recombination, and phytohormone signaling. Topping (removal of apical buds) is a common agricultural practice for some crop plants including cotton, cannabis, and tobacco. Maleic hydrazide (MH) is a systemic suckercide, a chemical that inhibits shoot bud growth, used to control the growth of apical (ApB) and axillary buds (AxB) following topping. However, the influence of MH on gene expression and the underlying molecular mechanism of controlling meristem development are not well studied. Our RNA sequencing analysis showed that MH significantly influences the transcriptomic landscape in ApB and AxB of chemically topped tobacco. Gene ontology (GO) enrichment analysis revealed that upregulated genes in ApB were enriched for phosphorelay signal transduction, and the regulation of transition timing from vegetative to reproductive phase, whereas downregulated genes were largely associated with meristem maintenance, cytokinin metabolism, cell wall synthesis, photosynthesis, and DNA metabolism. In MH-treated AxB, GO terms related to defense response and oxylipin metabolism were overrepresented in upregulated genes. GO terms associated with cell cycle, DNA metabolism, and cytokinin metabolism were enriched in downregulated genes. Expression of KNOX and MADS transcription factor (TF) family genes, known to be involved in meristem development, were affected in ApB and AxB by MH treatment. The promoters of MH-responsive genes are enriched for several known cis-acting elements, suggesting the involvement of a subset of TF families. Our findings suggest that MH affects shoot bud development in chemically topped tobacco by altering the expression of genes related to meristem development, DNA repair and recombination, cell division, and phytohormone signaling.

Indexed as

Gene Expression Regulation, PlantMaleic HydrazideNicotianaPlant ShootsTranscriptomeMaleic HydrazideApical and axillary bud developmentChemical toppingMaleic hydrazidePhytohormonesRNA sequencingSystemic suckercide

Identifiers

PMID32968874
OpenAlexW3087854600

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.