Evidence map›Paper›PMID 32968428›Full record

ArticleAlgorithms for molecular biology : AMB2020

A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups.

John L Spouge, Joseph M Ziegelbauer, Mileidy Gonzalez

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Article in Algorithms for molecular biology : AMB, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

3 authors.

John L SpougeNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Room 6N603, Building 38A, Bethesda, MD 20894 USA.ORCID 0000-0001-6207-1419
Joseph M ZiegelbauerHIV and AIDS Malignancy Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 USA.
Mileidy GonzalezGenomics Research and Development, Lenovo HPC and AI, 1009 Think Pl, Morrisville, NC 27560 USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundData about herpesvirus microRNA motifs on human circular RNAs suggested the following statistical question. Consider independent random counts, not necessarily identically distributed. Conditioned on the sum, decide whether one of the counts is unusually large. Exact computation of the p

resultsThis article gives a linear-time Jackknife Product algorithm. Its upward phase constructs a standard segment tree for computing segment products like

conclusionsIn the herpesvirus application, the Jackknife Product algorithm required 15 min; standard segment tree algorithms would have taken an estimated 3 h; and the quadratic algorithm, an estimated 1 month. The Jackknife Product algorithm has many possible uses in bioinformatics and statistics.

Indexed as

Commutative semigroupData structureJackknife productsLeave-one-outSegment tree

Identifiers

PMID32968428
PMCPMC7502207

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.