Evidence map›Paper›PMID 32968056›Full record

ArticleNature communications2020

A lysozyme with altered substrate specificity facilitates prey cell exit by the periplasmic predator Bdellovibrio bacteriovorus.

Christopher J Harding, Simona G Huwiler, Hannah Somers, Carey Lambert, Luke J Ray, Rob Till, Georgina Taylor, Patrick J Moynihan, R Elizabeth Sockett, Andrew L Lovering

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Enrichment isolation and metabolic characteristics ofApplied and environmental microbiology · 2025
    Article
  3. Article
  4. Curli-independent defense againstMicrobiology spectrum · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Learning with Bdellovibrio.Nature microbiology · 2023
    Article
  18. Article
  19. Parallel Evolution in PredatoryApplied and environmental microbiology · 2023
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Christopher J Harding *Institute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0003-0388-6460
Simona G Huwiler *Medical School, School of Life Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK.ORCID http://orcid.org/0000-0002-4876-9308
Hannah SomersMedical School, School of Life Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK.
Carey LambertMedical School, School of Life Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK.
Luke J RayMedical School, School of Life Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK.
Rob TillMedical School, School of Life Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK.
Georgina TaylorMedical School, School of Life Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK.
Patrick J MoynihanInstitute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0003-4182-6223
R Elizabeth SockettMedical School, School of Life Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK. liz.sockett@nottingham.ac.uk.ORCID http://orcid.org/0000-0002-6271-2674
Andrew L LoveringInstitute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK. a.lovering@bham.ac.uk.ORCID http://orcid.org/0000-0002-1856-7975

Funding

Biotechnology and Biological Sciences Research Council BB/J015229/1Biotechnology and Biological Sciences Research Council BB/M010325/1Biotechnology and Biological Sciences Research Council BB/S010122/1Wellcome TrustWellcome Trust 209437/Z/17/Z
6 · The paper itself

Abstract

Lysozymes are among the best-characterized enzymes, acting upon the cell wall substrate peptidoglycan. Here, examining the invasive bacterial periplasmic predator Bdellovibrio bacteriovorus, we report a diversified lysozyme, DslA, which acts, unusually, upon (GlcNAc-) deacetylated peptidoglycan. B. bacteriovorus are known to deacetylate the peptidoglycan of the prey bacterium, generating an important chemical difference between prey and self walls and implying usage of a putative deacetyl-specific "exit enzyme". DslA performs this role, and ΔDslA strains exhibit a delay in leaving from prey. The structure of DslA reveals a modified lysozyme superfamily fold, with several adaptations. Biochemical assays confirm DslA specificity for deacetylated cell wall, and usage of two glutamate residues for catalysis. Exogenous DslA, added ex vivo, is able to prematurely liberate B. bacteriovorus from prey, part-way through the predatory lifecycle. We define a mechanism for specificity that invokes steric selection, and use the resultant motif to identify wider DslA homologues.

Indexed as

Bacterial ProteinsBdellovibrio bacteriovorusCell WallEscherichia coliGene Expression Regulation, BacterialModels, MolecularMuramidaseMutationPeptidoglycanPeriplasmPhenotypeProtein ConformationSubstrate SpecificityBacterial ProteinsMuramidasePeptidoglycan

Identifiers

PMID32968056
PMCPMC7511926

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.