Evidence map›Paper›PMID 32967968›Full record

ArticleThe Journal of biological chemistry2020

Structural and molecular basis for the substrate positioning mechanism of a new PL7 subfamily alginate lyase from the arctic.

Fei Xu, Xiu-Lan Chen, Xiao-Hui Sun, Fang Dong, Chun-Yang Li, Ping-Yi Li, Haitao Ding, Yin Chen, Yu-Zhong Zhang, Peng Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

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  10. A "Pro-Asp-Thr" Amino Acid Repeat fromInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Fei XuState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, China.
Xiu-Lan ChenState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology, Qingdao, China.
Xiao-Hui SunState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, China.
Fang DongState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, China.
Chun-Yang LiLaboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology, Qingdao, China; College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China.
Ping-Yi LiState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, China.
Haitao DingSOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China.
Yin ChenCollege of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China; School of Life Sciences, University of Warwick, Warwick, Coventry, United Kingdom.
Yu-Zhong ZhangState Key Laboratory of Microbial Technology, and Marine Biotechnology Research Center, Shandong University, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology, Qingdao, China; College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China.
Peng WangLaboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology, Qingdao, China; College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China. Electronic address: wangpeng3331@ouc.edu.cn.
Shandong University · CNOcean University of China · CNPolar Research Institute of China · CNQingdao National Laboratory for Marine Science and Technology · CNUniversity of Warwick · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alginate lyases play important roles in alginate degradation in the ocean. Although a large number of alginate lyases have been characterized, little is yet known about those in extremely cold polar environments, which may have unique mechanisms for environmental adaptation and for alginate degradation. Here, we report the characterization of a novel PL7 alginate lyase AlyC3 from

Indexed as

Protein MultimerizationBacterial ProteinsCatalysisGammaproteobacteriaLaminariaPolysaccharide-LyasesProtein DomainsStructure-Activity RelationshipBacterial Proteinspoly(beta-D-mannuronate) lyasePolysaccharide-Lyasesalgaealginate lyaseArcticenzyme degradationenzyme mechanismmetabolismPL7 familysubfamilysubstrate positioning

Identifiers

PMID32967968
PMCPMC7705320
OpenAlexW3088091885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.