Evidence map›Paper›PMID 32967941›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2020

Autoantibody Landscape in Patients with Advanced Prostate Cancer.

William S Chen, Winston A Haynes, Rebecca Waitz, Kathy Kamath, Agustin Vega-Crespo, Raunak Shrestha, Minlu Zhang, Adam Foye, Ignacio Baselga Carretero, Ivan Perez Garcilazo and 21 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 7 institutions in 2 countries.

William S Chen *Department of Radiation Oncology, University of California San Francisco, San Francisco, California.
Winston A Haynes *Serimmune, Inc. Santa Barbara, California.
Rebecca Waitz *Serimmune, Inc. Santa Barbara, California.
Kathy KamathSerimmune, Inc. Santa Barbara, California.ORCID 0000-0001-6143-3414
Agustin Vega-CrespoDivision of Hematology and Oncology, University of California Los Angeles, Los Angeles, California.
Raunak ShresthaDepartment of Radiation Oncology, University of California San Francisco, San Francisco, California.ORCID 0000-0002-1144-1413
Minlu ZhangSerimmune, Inc. Santa Barbara, California.
Adam FoyeHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.
Ignacio Baselga CarreteroDivision of Hematology and Oncology, University of California Los Angeles, Los Angeles, California.ORCID 0000-0003-0229-4690
Ivan Perez GarcilazoDivision of Hematology and Oncology, University of California Los Angeles, Los Angeles, California.
Meng ZhangDepartment of Radiation Oncology, University of California San Francisco, San Francisco, California.
Shuang G ZhaoDepartment of Radiation Oncology, University of California San Francisco, San Francisco, California.
Martin SjöströmDepartment of Radiation Oncology, University of California San Francisco, San Francisco, California.ORCID 0000-0002-2629-9966
David A QuigleyHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.
Jonathan ChouHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0003-1258-0391
Tomasz M BeerKnight Cancer Institute, Oregon Health & Science University, Portland, Oregon.ORCID 0000-0001-5600-9993
Matthew RettigDivision of Hematology and Oncology, University of California Los Angeles, Los Angeles, California.ORCID 0000-0002-7394-3056
Martin GleaveUniversity of British Columbia, Vancouver, British Columbia, Canada.
Christopher P EvansUniversity of California Davis, Davis, California.
Primo LaraUniversity of California Davis, Davis, California.
Kim N ChiUniversity of British Columbia, Vancouver, British Columbia, Canada.
Robert E ReiterDepartment of Urology, University of California Los Angeles, Los Angeles, California.
Joshi J AlumkalKnight Cancer Institute, Oregon Health & Science University, Portland, Oregon.ORCID 0000-0003-1278-0166
Alan AshworthHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.
Rahul AggarwalHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.
Eric J SmallHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.
Patrick S DaughertySerimmune, Inc. Santa Barbara, California.
Antoni RibasDivision of Hematology and Oncology, University of California Los Angeles, Los Angeles, California.
David Y Oh *Department of Medicine, University of California San Francisco, San Francisco, California.
John C Shon *Serimmune, Inc. Santa Barbara, California.
Felix Y Feng *Department of Radiation Oncology, University of California San Francisco, San Francisco, California. Felix.Feng@ucsf.edu.
University of California, San Francisco · USUniversity of California, Los Angeles · USUniversity of California, Santa Barbara · USOregon Health & Science University · USUniversity of British Columbia · CAUniversity of California, Davis · USUCSF Helen Diller Family Comprehensive Cancer Center · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kate Taylor Shumate · 1999 to 2026
$209.7M
NRG Oncology Network Group Operations Center - GY9 BIQSFP Reports/BudgetsU10CA180868 · NCI · NRG ONCOLOGY FOUNDATION, INC. · PI Quynh-Thu Xuan Le, ROBERT S. MANNEL · 2014 to 2026
$206.8M
Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Gina M Dayton · 2002 to 2026
$84.9M
Tissue/InformaticsP50CA186786 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Ganesh S Palapattu · 2014 to 2026
$27.6M
Project 3: Modeling and overcoming resistance to melanoma immunotherapyP01CA244118 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MORICEAU, GATIEN P · 2020 to 2024
$12.8M
Next Generation Cancer Immunotherapies to Defeat MelanomaR35CA197633 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ANTONI RIBAS · 2015 to 2026
$10.4M
Molecular Mechanisms of Castration Resistant Prostate Cancer Recurrence & Therapeutic StrategiesR01CA227025 · NCI · WASHINGTON UNIVERSITY · PI FENG, FELIX YI-CHUNG, MAHAJAN, NUPAM P · 2019 to 2023
$2.8M
DNA repair alterations in metastatic prostate cancer: functional and therapeutic implicationsR01CA230516 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASHWORTH, ALAN, FENG, FELIX YI-CHUNG · 2018 to 2022
$2.7M
Identification of circulating and tissue-specific autoimmune responses in checkpoint inhibitor-induced immune-related adverse eventsK08AI139375 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI OH, DAVID YOONSUK · 2019 to 2023
$995k
NCI NIH HHS P01 CA244118NCI NIH HHS P30 CA082103NCI NIH HHS P30 CA093373NCI NIH HHS P50 CA186786NCI NIH HHS R01 CA227025NCI NIH HHS R01 CA230516NCI NIH HHS R35 CA197633NCI NIH HHS U10 CA180868NIAID NIH HHS K08 AI139375
6 · The paper itself

Abstract

purposeAutoantibody responses in cancer are of great interest, as they may be concordant with T-cell responses to cancer antigens or predictive of response to cancer immunotherapies. Thus, we sought to characterize the antibody landscape of metastatic castration-resistant prostate cancer (mCRPC). EXPERIMENTAL

designSerum antibody epitope repertoire analysis (SERA) was performed on patient serum to identify tumor-specific neoepitopes. Somatic mutation-specific neoepitopes were investigated by associating serum epitope enrichment scores with whole-genome sequencing results from paired solid tumor metastasis biopsies and germline blood samples. A protein-based immunome-wide association study (PIWAS) was performed to identify significantly enriched epitopes, and candidate serum antibodies enriched in select patients were validated by ELISA profiling. A distinct cohort of patients with melanoma was evaluated to validate the top cancer-specific epitopes.

resultsSERA was performed on 1,229 serum samples obtained from 72 men with mCRPC and 1,157 healthy control patients. Twenty-nine of 6,636 somatic mutations (0.44%) were associated with an antibody response specific to the mutated peptide. PIWAS analyses identified motifs in 11 proteins, including NY-ESO-1 and HERVK-113, as immunogenic in mCRPC, and ELISA confirmed serum antibody enrichment in candidate patients. Confirmatory PIWAS, Identifying Motifs Using Next-generation sequencing Experiments (IMUNE), and ELISA analyses performed on serum samples from 106 patients with melanoma similarly revealed enriched cancer-specific antibody responses to NY-ESO-1.

conclusionsWe present the first large-scale profiling of autoantibodies in advanced prostate cancer, utilizing a new antibody profiling approach to reveal novel cancer-specific antigens and epitopes. Our study recovers antigens of known importance and identifies novel tumor-specific epitopes of translational interest.

Indexed as

AgedAntigens, NeoplasmAutoantibodiesBiomarkers, TumorCase-Control StudiesEpitopesFollow-Up StudiesHumansMaleMutationPrognosisProspective StudiesProstatic NeoplasmsAntigens, NeoplasmAutoantibodiesBiomarkers, TumorEpitopes

Identifiers

PMID32967941
PMCPMC7710628
OpenAlexW3088801732

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.