Evidence map›Paper›PMID 32966779›Full record

ArticleCell reports2020

Replication Stress Induces Global Chromosome Breakage in the Fragile X Genome.

Arijita Chakraborty, Piroon Jenjaroenpun, Jing Li, Sami El Hilali, Andrew McCulley, Brian Haarer, Elizabeth A Hoffman, Aimee Belak, Audrey Thorland, Heidi Hehnly and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. The enigma of nuclear FMRP: facts and myths.Frontiers in cell and developmental biology · 2026
    Article
  3. Transcription-Coupled Repair and R-Loop Crosstalk in Genome Stability.International journal of molecular sciences · 2025
    Review
  4. Review
  5. Beyond the Synapse:International journal of molecular sciences · 2024
    Review
  6. Review
  7. Article
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  14. Article
  15. Article
  16. Article
  17. Article
  18. Mechanisms of theInternational journal of molecular sciences · 2022
    Review
  19. Review
  20. FMRP promotes transcription-coupled homologous recombination via facilitating TET1-mediated m5C RNA modification demethylation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Arijita ChakrabortyDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA.
Piroon JenjaroenpunBioinformatics Institute, Agency for Science Technology and Research (A(∗)STAR), 30 Biopolis Street, #07-01 Matrix, Singapore 138671, Singapore.
Jing LiDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA.
Sami El HilaliInstitut Curie, PSL Research University, CNRS, UMR3244, 75005 Paris, France; Sorbonne Université, 75005 Paris, France.
Andrew McCulleyDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA.
Brian HaarerDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA.
Elizabeth A HoffmanDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA.
Aimee BelakDepartment of Biology, Syracuse University, Syracuse, NY 13210, USA.
Audrey ThorlandDepartment of Biology, Syracuse University, Syracuse, NY 13210, USA.
Heidi HehnlyDepartment of Biology, Syracuse University, Syracuse, NY 13210, USA.
Carl L SchildkrautDepartment of Cell Biology, Albert Einstein College of Medicine, New York, NY 10461, USA.
Chun-Long ChenInstitut Curie, PSL Research University, CNRS, UMR3244, 75005 Paris, France; Sorbonne Université, 75005 Paris, France.
Vladimir A KuznetsovBioinformatics Institute, Agency for Science Technology and Research (A(∗)STAR), 30 Biopolis Street, #07-01 Matrix, Singapore 138671, Singapore; Department of Urology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA.
Wenyi FengDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 East Adams Street, Syracuse, NY 13210, USA. Electronic address: fengw@upstate.edu.
SUNY Upstate Medical University · USSyracuse University · USAgency for Science, Technology and Research · SGCentre National de la Recherche Scientifique · FRAlbert Einstein College of Medicine · US

Funding

DNA REPLICATION INITIATION SITES IN MAMMALIAN CELLSR01GM045751 · NIGMS · YESHIVA UNIVERSITY · PI SCHILDKRAUT, CARL L · 1992 to 2023
$13.4M
The relationship between Rab11-endosomes and the centrosome during divisionR01GM127621 · NIGMS · SYRACUSE UNIVERSITY · PI HEHNLY, HEIDI · 2018 to 2022
$1.8M
Mechanisms of replication stress-induced chromosome fragilityR01GM118799 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI FENG, WENYI · 2016 to 2020
$1.6M
Single Stranded DNA: The Genome's Achilles HeelR00GM081378 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI FENG, WENYI · 2011 to 2013
$658k
NIGMS NIH HHS R00 GM081378NIGMS NIH HHS R01 GM045751NIGMS NIH HHS R01 GM118799NIGMS NIH HHS R01 GM127621
6 · The paper itself

Abstract

Fragile X syndrome (FXS) is a neurodevelopmental disorder caused by mutations in the FMR1 gene and deficiency of a functional FMRP protein. FMRP is known as a translation repressor whose nuclear function is not understood. We investigated the global impact on genome stability due to FMRP loss. Using Break-seq, we map spontaneous and replication stress-induced DNA double-strand breaks (DSBs) in an FXS patient-derived cell line. We report that the genomes of FXS cells are inherently unstable and accumulate twice as many DSBs as those from an unaffected control. We demonstrate that replication stress-induced DSBs in FXS cells colocalize with R-loop forming sequences. Exogenously expressed FMRP in FXS fibroblasts ameliorates DSB formation. FMRP, not the I304N mutant, abates R-loop-induced DSBs during programmed replication-transcription conflict. These results suggest that FMRP is a genome maintenance protein that prevents R-loop accumulation. Our study provides insights into the etiological basis for FXS.

Indexed as

Chromosome BreakageDNA ReplicationGenome, HumanStress, PhysiologicalAphidicolinCell LineDNADNA DamageDNA RepairFibroblastsFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeHumansModels, BiologicalMutationR-Loop StructuresAphidicolinDNAFragile X Messenger Ribonucleoprotein 1RNAchromosome fragile sitesDNA double-strand breaksDNA replication stressDSBFMRPfragile X syndromeFXSgenome instabilityI304NR-loops

Identifiers

PMID32966779
PMCPMC7549430
OpenAlexW3088651435

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.