Evidence map›Paper›PMID 32966577›Full record

ArticleMolecular biology and evolution2021

A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana.

Ana Cristina Barragan, Maximilian Collenberg, Jinge Wang, Rachelle R Q Lee, Wei Yuan Cher, Fernando A Rabanal, Haim Ashkenazy, Detlef Weigel, Eunyoung Chae

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. A physical model links structure and function in the plant immune system.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Article
  6. Phenotypic characterization and gene mapping of hybrid necrosis in Triticum durum-Haynaldia villosa amphiploids.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Genomics of plant speciation.Plant communications · 2023
    Review
  14. A recessive LRR-RLK gene causes hybrid breakdown in cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  15. Review
  16. Breeding science · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ana Cristina BarraganDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Maximilian CollenbergDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Jinge WangDepartment of Biological Sciences, National University of Singapore, Singapore.
Rachelle R Q LeeDepartment of Biological Sciences, National University of Singapore, Singapore.
Wei Yuan CherDepartment of Biological Sciences, National University of Singapore, Singapore.
Fernando A RabanalDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Haim AshkenazyDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Detlef WeigelDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Eunyoung ChaeDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Max Planck Institute for Developmental Biology · DENational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hybrid necrosis in plants arises from conflict between divergent alleles of immunity genes contributed by different parents, resulting in autoimmunity. We investigate a severe hybrid necrosis case in Arabidopsis thaliana, where the hybrid does not develop past the cotyledon stage and dies 3 weeks after sowing. Massive transcriptional changes take place in the hybrid, including the upregulation of most NLR (nucleotide-binding site leucine-rich repeat) disease-resistance genes. This is due to an incompatible interaction between the singleton TIR-NLR gene DANGEROUS MIX 10 (DM10), which was recently relocated from a larger NLR cluster, and an unlinked locus, DANGEROUS MIX 11 (DM11). There are multiple DM10 allelic variants in the global A. thaliana population, several of which have premature stop codons. One of these, which has a truncated LRR-PL (leucine-rich repeat [LRR]-post-LRR) region, corresponds to the DM10 risk allele. The DM10 locus and the adjacent genomic region in the risk allele carriers are highly differentiated from those in the nonrisk carriers in the global A. thaliana population, suggesting that this allele became geographically widespread only relatively recently. The DM11 risk allele is much rarer and found only in two accessions from southwestern Spain-a region from which the DM10 risk haplotype is absent-indicating that the ranges of DM10 and DM11 risk alleles may be nonoverlapping.

Indexed as

Hybridization, GeneticAllelesArabidopsisGenome-Wide Association StudyNecrosisNLR ProteinsQuantitative Trait LociNLR ProteinsautoimmunityDM10hybrid incompatibilityinterchromosomal relocationLRR–PL regionsingleton NLR

Identifiers

PMID32966577
PMCPMC7826191
OpenAlexW3088499858

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.