Evidence map›Paper›PMID 32965162›Full record

ArticleRNA biology2021

Transposon clusters as substrates for aberrant splice-site activation.

Maria Elena Vilar Alvarez, Martin Chivers, Ivana Borovska, Steven Monger, Eleni Giannoulatou, Jana Kralovicova, Igor Vorechovsky

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Maria Elena Vilar AlvarezSchool of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0002-8036-6816
Martin ChiversSchool of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0001-8581-2670
Ivana BorovskaSlovak Academy of Sciences, Institute of Molecular Physiology and Genetics, Bratislava, Slovak Republic.ORCID 0000-0002-8090-387X
Steven MongerComputational Genomics Laboratory, Victor Chang Cardiac Research Institute, Darlinghurst, Australia.ORCID 0000-0003-4209-3092
Eleni GiannoulatouComputational Genomics Laboratory, Victor Chang Cardiac Research Institute, Darlinghurst, Australia.ORCID 0000-0002-7084-6736
Jana KralovicovaSchool of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0003-4385-8923
Igor VorechovskySchool of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0002-6740-6502
University of Southampton · GBSlovak Academy of Sciences · SKVictor Chang Cardiac Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposed elements (TEs) have dramatically shaped evolution of the exon-intron structure and significantly contributed to morbidity, but how recent TE invasions into older TEs cooperate in generating new coding sequences is poorly understood. Employing an updated repository of new exon-intron boundaries induced by pathogenic mutations, termed DBASS, here we identify novel TE clusters that facilitated exon selection. To explore the extent to which such TE exons maintain RNA secondary structure of their progenitors, we carried out structural studies with a composite exon that was derived from a long terminal repeat (LTR78) and

Indexed as

DNA Transposable ElementsRNA Splice SitesRNA SplicingAllelesBase SequenceExonsGene Expression RegulationHumansIntronsMutationNucleic Acid ConformationSequence Analysis, RNATranscription, GeneticDNA Transposable ElementsRNA Splice SitesDBASS3DBASS5genetic diseaselariat branch pointmutationRNA processingRNA secondary structuresplice siteTransposed element

Identifiers

PMID32965162
PMCPMC7951965
OpenAlexW3088254238

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.