Evidence map›Paper›PMID 32963293›Full record

ArticleCommunications biology2020

DNA minor-groove binder Hoechst 33258 destabilizes base-pairing adjacent to its binding site.

Xin-Xing Zhang, Shelby L Brantley, Steven A Corcelli, Andrei Tokmakoff

Abstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  6. Fluorescent Dyes for Differential Scanning Fluorimetry of RNA.Chembiochem : a European journal of chemical biology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Modeling the Infrared Spectroscopy of Oligonucleotides withThe journal of physical chemistry. B · 2023
    Article
  14. Article
  15. Article
  16. Infrared Diffusion-Ordered Spectroscopy Reveals Molecular Size and Structure.Angewandte Chemie (International ed. in English) · 2023
    Article
  17. Article
  18. Dinuclear platinum(II) complexes as the pattern for phosphate backbone binding: a new perspective for recognition of binding modes to DNA.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2022
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xin-Xing ZhangDepartment of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, 929 E. 57th St., Chicago, IL, 60637, USA. xxzhangv@sina.com.ORCID http://orcid.org/0000-0001-6974-4727
Shelby L BrantleyDepartment of Chemistry and Biochemistry, University of Norte Dame, Notre Dame, IN, 46556, USA.
Steven A CorcelliDepartment of Chemistry and Biochemistry, University of Norte Dame, Notre Dame, IN, 46556, USA. scorcell@nd.edu.
Andrei TokmakoffDepartment of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, 929 E. 57th St., Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-2434-8744

Funding

The Dynamics of Molecular Recognition by Proteins from 2D IR Spectroscopy and MD SimulationsR01GM118774 · NIGMS · UNIVERSITY OF CHICAGO · PI TOKMAKOFF, ANDREI · 2016 to 2019
$1.6M
NIGMS NIH HHS R01 GM118774NIGMS NIH HHS R01GM118774
6 · The paper itself

Abstract

Understanding the dynamic interactions of ligands to DNA is important in DNA-based nanotechnologies. By structurally tracking the dissociation of Hoechst 33258-bound DNA (d(CGCAAATTTGCG)

Indexed as

Binding SitesBisbenzimidazoleDNADNA BreaksHydrogen BondingNucleic Acid DenaturationSpectroscopy, Fourier Transform InfraredThermodynamicsBisbenzimidazoleDNAtriplex DNA

Identifiers

PMID32963293
PMCPMC7508854

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.