Evidence map›Paper›PMID 32963085›Full record

ArticleG3 (Bethesda, Md.)2020

Network Analysis Prioritizes

Margi Hartanto, Ronny V L Joosen, Basten L Snoek, Leo A J Willems, Mark G Sterken, Dick de Ridder, Henk W M Hilhorst, Wilco Ligterink, Harm Nijveen

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Plasticity of maternal environment-dependent expression-QTLs of tomato seeds.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Margi HartantoBioinformatics Group, Wageningen University, NL-6708 PB Wageningen, The Netherlands margi.hartanto@wur.nl harm.nijveen@wur.nl.ORCID 0000-0002-8714-1337
Ronny V L JoosenLaboratory of Plant Physiology, Wageningen University, NL-6708 PB Wageningen, The Netherlands.
Basten L SnoekTheoretical Biology and Bioinformatics, Utrecht University, 3584 CH Utrecht, The Netherlands.ORCID 0000-0001-5321-2996
Leo A J WillemsLaboratory of Plant Physiology, Wageningen University, NL-6708 PB Wageningen, The Netherlands.
Mark G SterkenLaboratory of Nematology, Wageningen University, NL-6708 PB Wageningen, The Netherlands.ORCID 0000-0001-7119-6213
Dick de RidderBioinformatics Group, Wageningen University, NL-6708 PB Wageningen, The Netherlands.ORCID 0000-0002-4944-4310
Henk W M HilhorstLaboratory of Plant Physiology, Wageningen University, NL-6708 PB Wageningen, The Netherlands.ORCID 0000-0002-6743-583X
Wilco LigterinkLaboratory of Plant Physiology, Wageningen University, NL-6708 PB Wageningen, The Netherlands.ORCID 0000-0002-0228-169X
Harm NijveenBioinformatics Group, Wageningen University, NL-6708 PB Wageningen, The Netherlands margi.hartanto@wur.nl harm.nijveen@wur.nl.ORCID 0000-0002-9167-4945
Wageningen University & Research · NLUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Seed germination is characterized by a constant change of gene expression across different time points. These changes are related to specific processes, which eventually determine the onset of seed germination. To get a better understanding on the regulation of gene expression during seed germination, we performed a quantitative trait locus mapping of gene expression (eQTL) at four important seed germination stages (primary dormant, after-ripened, six-hour after imbibition, and radicle protrusion stage) using

Indexed as

ArabidopsisChromosome MappingGene Expression Regulation, PlantGerminationQuantitative Trait LociSeedsTranscription FactorsICE1 protein, ArabidopsisTranscription FactorsArabidopsiseQTLnetwork analysisseed germination

Identifiers

PMID32963085
PMCPMC7642920
OpenAlexW3088191089

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.