Evidence map›Paper›PMID 32962661›Full record

ArticleBMC medical genetics2020

Genetic analysis of children with congenital ocular anomalies in three ecological regions of Nepal: a phase II of Nepal pediatric ocular diseases study.

Srijana Adhikari, Neelam Thakur, Ujjowala Shrestha, Mohan K Shrestha, Murarai Manshrestha, Bijay Thapa, Manish Poudel, Ajaya Kunwar

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Srijana AdhikariTilganga Institute of Ophthalmology, PO Box 561, Kathmandu, Nepal. srij_a@yahoo.com.ORCID 0000-0003-4894-9533
Neelam ThakurNational Academy of Medical Sciences NAMS, Bir Hospital, Kathmandu, Nepal.
Ujjowala ShresthaSudrishti Eye Clinic, Kathmandu, Nepal.
Mohan K ShresthaTilganga Institute of Ophthalmology, PO Box 561, Kathmandu, Nepal.
Murarai ManshresthaTilganga Institute of Ophthalmology, PO Box 561, Kathmandu, Nepal.
Bijay ThapaPatan Academy of Health Sciences, Patan, Nepal.
Manish PoudelTilganga Institute of Ophthalmology, PO Box 561, Kathmandu, Nepal.
Ajaya KunwarThe Kathmandu Centre for Genomics and Research Laboratory, Kathmandu, Nepal.
Tilganga Institute of Ophthalmology · NPBir Hospital · NPKathmandu University · NPPatan Academy of Health Sciences · NP

Funding

Fred Hollows Foundation NA
6 · The paper itself

Abstract

backgroundGenetic eye diseases constitute a large and heterogeneous group of childhood ocular morbidity. Individual diseases may cause multiple structural anomalies and developmental features. Nepal Pediatric Ocular Disease Study (NPODS) was a population-based epidemiological study conducted across three ecological regions of Nepal to determine the prevalence and etiology of childhood ocular morbidity and blindness. In Phase II of this study, genetic analysis was performed for children who were found to have congenital ocular anomalies.

methodIt was a cross sectional descriptive study. A total of 10,270 children across three different ecological regions in Nepal (Low lands, hills, and mountains) underwent ocular examinations in NPODS. Out of 374 (3.6%) of children with ocular abnormalities, 30 were thought to be congenital in nature. Targeted genetic analysis, including genotyping for genes specific to presenting phenotype, was performed for 25 children using serum samples.

resultsOut of 25 children, 18 had meaningful genetic results. Analysis revealed one missense alteration G12411T of Zinc Finger Homeobox 4 (ZFHX4) gene in one participant among 10 with congenital ptosis and another missense variation T > C P. Y374 C of Signaling Receptor and Transporter Retinol 6 (STRA6) gene in one participant among 3 with microphthalmos.

conclusionThe study is first of its kind from Nepal and mutant genes were unique to Nepalese Population. Further analysis of genetic factors is crucial to better understand genetic association with ocular diseases and conditions. This helps further in genetic counseling and probably gene therapy to prevent blindness from these conditions.

Indexed as

Mutation, MissenseAdolescentAltitudeBlindnessChildChild, PreschoolCongenital AbnormalitiesCross-Sectional StudiesEye DiseasesFemaleGenetic Predisposition to DiseaseHomeodomain ProteinsHumansInfantInfant, NewbornMaleHomeodomain ProteinsMembrane ProteinsSTRA6 protein, humanTranscription FactorsZFHX4 protein, humanCongenital anomaliesGeneticsNepalOcularPediatric

Identifiers

PMID32962661
PMCPMC7510079
OpenAlexW3088818441

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.