Evidence map›Paper›PMID 32961931›Full record

ArticleInternational journal of molecular sciences2020

Hypermethylation of Auxin-Responsive Motifs in the Promoters of the Transcription Factor Genes Accompanies the Somatic Embryogenesis Induction in Arabidopsis.

Daria Grzybkowska, Katarzyna Nowak, Małgorzata D Gaj

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Somatic Embryogenesis of SelectedPlants (Basel, Switzerland) · 2026
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Suspension cell cultures ofFrontiers in plant science · 2024
    Article
  9. Article
  10. Regulatory Small RNAs for a Sustained Eco-Agriculture.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Plant Cell and Organism Development 2.0.International journal of molecular sciences · 2022
    Article
  14. Frontiers in plant science · 2022
    Article
  15. Article
  16. Article
  17. Weighted Gene Correlation Network Analysis (WGCNA) ofInternational journal of genomics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Daria GrzybkowskaFaculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Jagiellońska 28, 40-032 Katowice, Poland.
Katarzyna NowakFaculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Jagiellońska 28, 40-032 Katowice, Poland.
Małgorzata D GajFaculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Jagiellońska 28, 40-032 Katowice, Poland.ORCID 0000-0003-2995-4134
University of Silesia in Katowice · PL

Funding

National Science Centre in Poland OPUS13 2017/25/B/NZ1/01615
6 · The paper itself

Abstract

The auxin-induced embryogenic reprogramming of plant somatic cells is associated with extensive modulation of the gene expression in which epigenetic modifications, including DNA methylation, seem to play a crucial role. However, the function of DNA methylation, including the role of auxin in epigenetic regulation of the SE-controlling genes, remains poorly understood. Hence, in the present study, we analysed the expression and methylation of the

Indexed as

Amino Acid MotifsArabidopsisArabidopsis ProteinsCCAAT-Enhancer-Binding ProteinsCells, CulturedDNA MethylationEpigenesis, GeneticGene Expression Regulation, PlantHomeodomain ProteinsIndoleacetic AcidsMADS Domain ProteinsPromoter Regions, GeneticTranscription FactorsAGL15 protein, ArabidopsisArabidopsis ProteinsBABY BOOM protein, ArabidopsisCCAAT-Enhancer-Binding ProteinsHomeodomain ProteinsIndoleacetic AcidsLEC1 protein, ArabidopsisLEC2 protein, ArabidopsisMADS Domain ProteinsTranscription FactorsWUSCHEL protein, ArabidopsisDNA methylationSE-related genessomatic embryogenesis

Identifiers

PMID32961931
PMCPMC7555384
OpenAlexW3087432719

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.