Evidence map›Paper›PMID 32960676›Full record

ArticleAutophagy2021

RAB33B recruits the ATG16L1 complex to the phagophore via a noncanonical RAB binding protein.

Supansa Pantoom, Georgios Konstantinidis, Stephanie Voss, Hongmei Han, Oliver Hofnagel, Zhiyu Li, Yao-Wen Wu

Open access · hybridAbstract read
In one paragraph

Article in Autophagy, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  8. Hepatitis B virus entry, assembly, and egress.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  9. ZDHHC7-mediatedAutophagy · 2024
    Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 4 countries.

Supansa PantoomDepartment of Chemistry, Umeå Centre for Microbial Research, Umeå University, Umeå, Sweden.ORCID 0000-0001-9630-1999
Georgios KonstantinidisDepartment of Chemistry, Umeå Centre for Microbial Research, Umeå University, Umeå, Sweden.ORCID 0000-0002-9306-2483
Stephanie VossChemical Genomics Centre of the Max Planck Society, Dortmund, Germany.
Hongmei HanMax-Planck-Institute of Molecular Physiology, Dortmund, Germany.
Oliver HofnagelMax-Planck-Institute of Molecular Physiology, Dortmund, Germany.
Zhiyu LiNational Cancer Center, National Clinical Research Center for Cancer, Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.ORCID 0000-0003-1666-9115
Yao-Wen WuDepartment of Chemistry, Umeå Centre for Microbial Research, Umeå University, Umeå, Sweden.ORCID 0000-0002-2573-8736
Max Planck Institute of Molecular Physiology · DEChinese Academy of Medical Sciences & Peking Union Medical College · CNFoundation for Research and Technology Hellas · GRMax Planck Society · DEUmeå University · SEUniversity of Rostock · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagosome formation is a fundamental process in macroautophagy/autophagy, a conserved self-eating mechanism in all eukaryotes, which requires the conjugating ATG (autophagy related) protein complex, ATG12-ATG5-ATG16L1 and lipidated MAP1LC3/LC3 (microtubule associated protein 1 light chain 3). How the ATG12-ATG5-ATG16L1 complex is recruited to membranes is not fully understood. Here, we demonstrated that RAB33B plays a key role in recruiting the ATG16L1 complex to phagophores during starvation-induced autophagy. Crystal structures of RAB33B bound to the coiled-coil domain (CCD) of ATG16L1 revealed the recognition mechanism between RAB33B and ATG16L1. ATG16L1 is a novel RAB-binding protein (RBP) that can induce RAB proteins to adopt active conformation without nucleotide exchange. RAB33B and ATG16L1 mutually determined the localization of each other on phagophores. RAB33B-ATG16L1 interaction was required for LC3 lipidation and autophagosome formation. Upon starvation, a fraction of RAB33B translocated from the Golgi to phagophores and recruited the ATG16L1 complex. In this work, we reported a new mechanism for the recruitment of the ATG12-ATG5-ATG16L1 complex to phagophores by RAB33B, which is required for autophagosome formation.

Indexed as

AutophagosomesAutophagy-Related ProteinsCarrier Proteinsrab GTP-Binding ProteinsAnimalsAutophagyFibroblastsHumansMiceProtein BindingATG16L1 protein, humanAtg16l1 protein, mouseAutophagy-Related ProteinsCarrier ProteinsRAB33B protein, humanRab33B protein, mouserab GTP-Binding ProteinsATG12–ATG5-ATG16L1 complexATG16L1autophagosome formationautophagycrystal structureRAB33BRAB33B-ATG16L1 complex

Identifiers

PMID32960676
PMCPMC8496732
OpenAlexW3089027488

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.