Evidence map›Paper›PMID 32958671›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer.

Lindsey Barske, Peter Fabian, Christine Hirschberger, David Jandzik, Tyler Square, Pengfei Xu, Nellie Nelson, Haoze Vincent Yu, Daniel M Medeiros, J Andrew Gillis and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  4. A perspective on neuroethology: what the past teaches us about the future of neuroethology.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2024
    Review
  5. Craniofacial developmental biology in the single-cell era.Development (Cambridge, England) · 2023
    Review
  6. Article
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  9. Coordinated patterning of zebrafish caudal fin symmetry by a central and two peripheral organizers.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Lindsey BarskeDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research, W. M. Keck School of Medicine, University of Southern California, Los Angeles, CA 90033; lindsey.barske@cchmc.org gcrump@usc.edu.ORCID 0000-0003-1275-7978
Peter FabianDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research, W. M. Keck School of Medicine, University of Southern California, Los Angeles, CA 90033.ORCID 0000-0002-1096-6875
Christine HirschbergerDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom.
David JandzikDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309.ORCID 0000-0002-4239-0014
Tyler SquareDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309.ORCID 0000-0002-7579-5122
Pengfei XuDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research, W. M. Keck School of Medicine, University of Southern California, Los Angeles, CA 90033.ORCID 0000-0003-3542-3858
Nellie NelsonDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research, W. M. Keck School of Medicine, University of Southern California, Los Angeles, CA 90033.ORCID 0000-0003-3220-5601
Haoze Vincent YuDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research, W. M. Keck School of Medicine, University of Southern California, Los Angeles, CA 90033.ORCID 0000-0002-3831-2291
Daniel M MedeirosDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309.ORCID 0000-0002-8182-6028
J Andrew GillisDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom.ORCID 0000-0003-2062-3777
J Gage CrumpDepartment of Stem Cell Biology and Regenerative Medicine, Eli and Edythe Broad CIRM Center for Regenerative Medicine and Stem Cell Research, W. M. Keck School of Medicine, University of Southern California, Los Angeles, CA 90033; lindsey.barske@cchmc.org gcrump@usc.edu.ORCID 0000-0002-3209-0026
University of Southern California · USUniversity of Colorado Boulder · USMarine Biological Laboratory · USUniversity of Cambridge · GB

Funding

Progenitor Regulation in Craniofacial Development and RegenerationR35DE027550 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CRUMP, GAGE D · 2017 to 2024
$8.0M
Epigenetic mechanisms underlying the failure of hair cell regeneration in mammalsR01DC015829 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCMAHON, ANDREW P., OGHALAI, JOHN S · 2018 to 2022
$2.8M
Prolonger progenitor maintenance sculpts the upper faceR00DE026239 · NIDCR · CINCINNATI CHILDRENS HOSP MED CTR · PI BARSKE, LINDSEY ANNE · 2019 to 2021
$744k
Testing models of pharyngeal segmentation using the sea lamprey Petromyzon marinus and the frog Xenopus laevisR21DE025940 · NIDCR · UNIVERSITY OF COLORADO · PI MEDEIROS, DANIEL MEULEMANS · 2016 to 2017
$419k
Biotechnology and Biological Sciences Research CouncilNIDCD NIH HHS R01 DC015829NIDCR NIH HHS R00 DE026239NIDCR NIH HHS R21 DE025940NIDCR NIH HHS R35 DE027550
6 · The paper itself

Abstract

Whereas the gill chambers of jawless vertebrates open directly into the environment, jawed vertebrates evolved skeletal appendages that drive oxygenated water unidirectionally over the gills. A major anatomical difference between the two jawed vertebrate lineages is the presence of a single large gill cover in bony fishes versus separate covers for each gill chamber in cartilaginous fishes. Here, we find that these divergent patterns correlate with the pharyngeal arch expression of Pou3f3 orthologs. We identify a deeply conserved Pou3f3 arch enhancer present in humans through sharks but undetectable in jawless fish. Minor differences between the bony and cartilaginous fish enhancers account for their restricted versus pan-arch expression patterns. In zebrafish, mutation of Pou3f3 or the conserved enhancer disrupts gill cover formation, whereas ectopic pan-arch Pou3f3b expression generates ectopic skeletal elements resembling the multimeric covers of cartilaginous fishes. Emergence of this Pou3f3 arch enhancer >430 Mya and subsequent modifications may thus have contributed to the acquisition and diversification of gill covers and respiratory strategies during gnathostome evolution.

Indexed as

Enhancer Elements, GeneticEvolution, MolecularAnimalsFishesGillsMutationPhylogenyPOU Domain FactorsSharksVertebratesPOU Domain Factorsenhancer deletiongill coverneural crestPou3f3vertebrate evolution

Identifiers

PMID32958671
PMCPMC7547273
OpenAlexW3087015692

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.